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Basic Information
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CGSNL Gene Symbol
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PIKM
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Gene Symbol Synonym
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Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
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CGSNL Gene Name
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PYRICULARIA ORYZAE RESISTANCE KM
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Gene Name Synonym
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Pyricularia oryzae resistance KM, Magnaporthe grisea resistance km, Blast resistance km
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Protein Name
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Allele
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Chromosome No.
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11
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Explanation
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Pyricularia oryzae resistance. Original line is Minehikari (Japonica). Map position (115.1-117.0 cM). Pi-km is one of the alleles in the Pi-k locus. Pikm-specific resistance is conferred by cooperation of Pikm1-TS and Pikm2-TS (Ashikawa et al. 2008). B5UBC1.
Locus 1: Os11g0688832 (LOC_Os11g46200.1), symbol: Pikm1, Pikm1-TS, Pik1-KA, Pik-1, Pikp-1, Pikm5-NP, Pik1-H4, Pi1-5, sequence: AB462324(Pikm1), AB616658 (Pik1-KA), ABA95385 (Pikm5-NP), AB510251-AB510297 (Pikm1-TS variant 1~ variant 47).
Locus 2: Os11g0689100 (LOC_Os11g46210.1, AK073759, AK108692), symbol: Pikm2, Pikm2-TS, Pik2-KA, Pik-2, Pikp-2, Pikm6-NP, Pik2-H4, Pi1-6, sequence: AB462325(Pikm2), AB510298-AB510347 (Pikm2-TS variant 1~variant 50).
sequence covering both Os11g0688832 and Os11g0689100: AB462256(Pikm1-TS, Pikm2-TS), HM048900 (Pik-2, Pik-1), HM035360 (Pikp-1, Pikp-2), AB616659 (Pik2-KA, Pik1-KA), HQ606329 (Pi1-5C, Pi1-6C).
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Trait Class
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Tolerance and resistance - Disease resistance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK108692
AK073759
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MSU ID
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LOC_Os11g46200.1
LOC_Os11g46210.1
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RAP ID
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Os11g0688832/Os11g0689100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
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RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Bentham A.R., De la Concepcion JC., Benjumea J.V., Kourelis J., Jones S., Mendel M., Stubbs J., Stevenson C.E.M., Maidment J.H.R., Youles M., Zdrzałek R., Kamoun S., Banfield M.J.
Plant Cell 2023 35(10) 3809-3827
Allelic compatibility in plant immune receptors facilitates engineering of new effector recognition specificities.
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Yadav M.K., S A., Ngangkham U., Shubudhi H.N., Bag M.K., Adak T., Munda S., Samantaray S., Jena M.
PLoS ONE 2017 12(4) e0176236
Use of molecular markers in identification and characterization of resistance to rice blast in India.
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Miah G., Rafii M.Y., R .Ismail M., B. Puteh A., A. Rahim H., Asfaliza R., A. Latif M.
Mol. Biol. Rep. 2013 40(3) 2369-88
Blast resistance in rice: a review of conventional breeding to molecular approaches
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Luo,S., Zhang,Y., Hu,Q., Chen,J., Li,K., Lu,C., Liu,H., Wang,W. and Kuang,H.
Plant Physiol. 2012 159(1) 197-210
Dynamic Nucleotide-Binding-Site and Leucine-Rich-Repeat- encoding Genes in the Grass Family
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Sharma T.R., Rai A.K., Gupta S.K., Vijayan J., Devanna B.N., Ray S.
Agric Res 2012 1 37-52
Rice Blast Management Through Host-Plant Resistance: Retrospect and Prospects
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Costanzo,S. and Jia,Y.
Plant Sci. 2010 178(6) 523-530
Sequence variation at the rice blast resistance gene Pi-km locus: Implications for the development of allele specific markers
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Ashikawa,I., Wu,J., Matsumoto,T. and Ishikawa,R.
J. Gen. Plant Pathol. 2010 76(1) 37-42
Haplotype diversity and molecular evolution of the rice Pikm locus for blast resistance
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Koide Y., Kobayashi N., Xu D., Fukuta Y.
JARQ 2009 43 255-280
Resistance Genes and Selection DNA Markers for Blast Disease in Rice (Oryza sativa L.)
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Ballini E., Morel J.B., Droc G., Price A., Courtois B., Notteghem J.L., Tharreau D.
Mol. Plant Microbe Interact. 2008 21(7) 859-68
A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance.
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Ashikawa,I., Hayashi,N., Yamane,H., Kanamori,H., Wu,J., Matsumoto,T., Ono,K. and Yano,M.
Genetics 2008 180(4) 2267-2276
Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance
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Li Y.B., Wu C.J., Jiang G.H., Wang L.Q., He Y.Q.
Plant Breeding 2007 126 541-547
Dynamic analyses of rice blast resistance for the assessment of genetic and environmental effects.
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Hayashi K, Yoshida H, Ashikawa I.
Theor. Appl. Genet. 2006 113(2) 251-260
Development of PCR-based allele-specific and InDel marker sets for nine rice blast resistance genes.
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Bryan,G.T., Wu,K.S., Farrall,L., Jia,Y., Hershey,H.P., McAdams,S.A., Faulk,K.N., Donaldson,G.K., Tarchini,R. and Valent,B.
Plant Cell 2000 12(11) 2033-2045
tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta.
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Kaji, R. and T. Ogawa
Breeding Science 1996 46(Suppl. 1) 70
RFLP mapping of a blast resistance gene, Pi-km, in rice.
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Kinoshita, T.
RGN 1995 12 9-24
I. New gene symbols registered.
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Inukai, T., R.J. Nelson, R.S. Zeigler, S. Sarkarung, D.J. Mackill, J.M. Bonman, I. Takamure and T. Kinoshita
Phytopathology 1994 84 1278-1283.
Allelism of blast resistance genes in near-isogenic lines of rice.
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Kiyosawa S.
RGN 1984 1 95-96
Establishment of differential varieties for pathogenicity test of rice blast fungus
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Kiyosawa, S.
Japan. J. Breed. 1978 28(4) 287-296.
Identification of blast-resistance genes in some varieties.
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Kiyosawa S.
Japan. J. Breeding 1969 19 61-73
Inheritance of resistance of rice varieties to a Philippine fungus strain of Pyricularia oryzae
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Kiyosawa S.
Japan. J. Breeding 1968 18 193-205
Inheritance of blast-resistance in some Chinese rice varieties and their derivatives
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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serine-type endopeptidase inhibitor activity( GO:0004867 )
response to fungus( GO:0009620 )
ATP binding( GO:0005524 )
defense response( GO:0006952 )
nucleoside-triphosphatase activity( GO:0017111 )
ADP binding( GO:0043531 )
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Trait Ontology
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Plant Ontology
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Related Strains
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Phenotype images
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Last updated
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Jan 17, 2024
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Update info.