Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PSR1
Gene Symbol Synonym PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR, OsNiR2
Gene Name Synonym Promotor of shoot regeneration-1, ferredoxin-nitrite reductase, "Ferredoxin--nitrite reductase, chloroplastic"
Chromosome No. 1
Explanation D50556. Q42997. EC= OsNIR1 in Wang et al. 2018, Hu et al. 2019. OsNiR2 in Wang et al. 2020, Gao et al. 2023.
Trait Class Character as QTL
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Vegetative organ - Culm
Biochemical character
cDNA Accession No. AK061893
MSU ID LOC_Os01g25484.1
RAP ID Os01g0357100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Gao J., Ge S., Wang H., Fang Y., Sun L., He T., Cheng X., Wang D., Zhou X., Cai H., Li C., Liu Y., E Y., Meng J., Chen W.
Front Plant Sci 2023  14  1131937
Biochar-extracted liquor stimulates nitrogen related gene expression on improving nitrogen utilization in rice seedling.
Wang M., Hasegawa T., Beier M., Hayashi M., Ohmori Y., Yano K., Teramoto S., Kamiya T., Fujiwara T.
Plant Cell Physiol. 2021   
Growth and nitrate reductase activity are impaired in rice OsNLP4 mutantssupplied with nitrate.
Lian L., Lin Y., Wei Y., He W., Cai Q., Huang W., Zheng Y., Xu H., Wang F., Zhu Y., Luo X., Xie H., Zhang J.
BMC Plant Biol. 2021  21(1)  287
PEPC of sugarcane regulated glutathione S-transferase and altered carbon-nitrogen metabolism under different N source concentrations in Oryza sativa.
Xiang D., Meng F., Wang A., Wu Y., Wang Z., Zheng S., Mao C.
Plant J. 2021  107(2)  480-492
Root-secreted peptide OsPEP1 regulates primary root elongation in rice.
Wang D., Xu T., Yin Z., Wu W., Geng H., Li L., Yang M., Cai H., Lian X.
Front Plant Sci 2020  11  369
Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.
Yu J., Xuan W., Tian Y., Fan L., Sun J., Tang W., Chen G., Wang B., Liu Y., Wu W., Liu X., Jiang X., Zhou C., Dai Z., Xu D., Wang C., Wan J.
Plant Biotechnol. J. 2020   
Enhanced OsNLP4-OsNiR cascade confers nitrogen use efficiency by promoting tiller number in rice.
Hu B., Jiang Z., Wang W., Qiu Y., Zhang Z., Liu Y., Li A., Gao X., Liu L., Qian Y., Huang X., Yu F., Kang S., Wang Y., Xie J., Cao S., Zhang L., Wang Y., Xie Q., Kopriva S., Chu C.
Nat Plants 2019  5(4)  401-413
Nitrate-NRT1.1B-SPX4 cascade integrates nitrogen and phosphorus signalling networks in plants.
Sade N., Umnajkitikorn K., Rubio Wilhelmi MDM., Wright M., Wang S., Blumwald E.
J. Exp. Bot. 2018  69(4)  867-878
Delaying chloroplast turnover increases water-deficit stress tolerance through the enhancement of nitrogen assimilation in rice.
Wang W., Hu B., Yuan D., Liu Y., Che R., Hu Y., Ou S., Liu Y., Zhang Z., Wang H., Li H., Jiang Z., Zhang Z., Gao X., Qiu Y., Meng X., Liu Y., Bai Y., Liang Y., Wang Y., Zhang L., Li L., Sodmergen, Jing H., Li J., Chu C.
Plant Cell 2018  30(3)  638-651
Expression of the Nitrate Transporter Gene <i>OsNRT1.1A/OsNPF6.3</i> Confers High Yield and Early Maturation in Rice.
Wang H., Wu Z., Han J., Zheng W., Yang C.
PLoS ONE 2012  7(5)  e37817
Comparison of ion balance and nitrogen metabolism in old and young leaves of alkali-stressed rice plants.
Nishimura A, Ashikari M, Lin S, Takashi T, Angeles ER, Yamamoto T, Matsuoka M.
Proc. Natl. Acad. Sci. U.S.A. 2005  102(33)  11940-11944
Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems.
Terada,Y., Aoki,H., Tanaka,T., Morikawa,H. and Ida,S.
Biosci. Biotechnol. Biochem. 1995  59(11)  2183-2185
Cloning and nucleotide sequence of a leaf ferredoxin-nitrite reductase cDNA of rice.
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DB Reference
Gramene ID -
Gene Ontology response to nutrient( GO:0007584 )
nitrogen utilization( GO:0019740 )
metal ion binding( GO:0046872 )
chloroplast( GO:0009507 )
heme binding( GO:0020037 )
transport( GO:0006810 )
4 iron, 4 sulfur cluster binding( GO:0051539 )
electron transport chain( GO:0022900 )
nitrate assimilation( GO:0042128 )
ferredoxin-nitrite reductase activity( GO:0048307 )
Trait Ontology tiller number( TO:0000346 )
yield trait( TO:0000371 )
panicle size( TO:0006032 )
primary branch number( TO:0000547 )
secondary branch number( TO:0000557 )
nutrient sensitivity( TO:0000480 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Oct 12, 2023