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Basic Information
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CGSNL Gene Symbol
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D3
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Gene Symbol Synonym
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d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3, OsFBL27, FBL27
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CGSNL Gene Name
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DWARF BUNKETSUWAITO TILLERING
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Gene Name Synonym
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bunketsuwaito tillering dwarf, dwarf-3, F-box/LRR-repeat MAX2 homolog, F-box and leucine-rich repeat MAX2 homolog, DWARF 3, DWARF-3, suppressor of lazy1, DWARF3, ORESARA 9, MAX2 ortholog, F-box-type E3 ubiquitin ligase L27
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Protein Name
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F-BOX/LRR-REPEAT MAX2 HOMOLOG
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Allele
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Osd3, d3, d3-1, d3-2, d3-3, sol1, sol1-1, sol1-2, d3 300097, gsor300097
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Chromosome No.
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6
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Explanation
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Profuse tillering with slender leaves. Duplicate or triplicate. Q5VMP0. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. F-box protein. a rice homolog of Arabidopsis ORESARA 1. an F-box component of the Skp-Cullin-F-box (SCF) E3 ubiquitin ligase complex. GO:0090548: response to nitrate starvation. GO:1901698: response to nitrogen compound. GO:1902347: response to strigolactone. PRJNA593368 in the Gene Expression Omnibus database. GO:0080167: response to karrikin. GO:0036377: arbuscular mycorrhizal association. GO:2000023: regulation of lateral root development.
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Trait Class
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Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK065478
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MSU ID
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LOC_Os06g06050.1
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RAP ID
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Os06g0154200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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168.0
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Link map
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Classical linkage map
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References
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Huo C., Zhang B., Wang R.
Plant Signal Behav 2022 17(1) 2004035
Research progress on plant noncoding RNAs in response to low-temperature stress.
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Chiu C.H., Roszak P., Orvošová M., Paszkowski U.
Curr. Biol. 2022 32(20) 4428-4437.e3
Arbuscular mycorrhizal fungi induce lateral root development in angiosperms via a conserved set of MAMP receptors.
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Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022 23(1) 154
An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
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Nasir F., Bahadur A., Lin X., Gao Y., Tian C.
J. Exp. Bot. 2021 72(5) 1546-1557
Novel insights into host receptors and receptor-mediated signaling that regulate arbuscular mycorrhizal symbiosis.
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M T AP., Ramchander S., K K K., Muthamilarasan M., Pillai M.A.
PLoS ONE 2021 16(1) e0245603
Assessment of efficacy of mutagenesis of gamma-irradiation in plant height and days to maturity through expression analysis in rice.
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Jiang J., Yang G., Xin Y., Wang Z., Yan W., Chen Z., Tang X., Xia J.
Genes (Basel) 2021 12(5)
Overexpression of <i>OsMed16</i> Inhibits the Growth of Rice and Causes Spontaneous Cell Death.
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Hull R., Choi J., Paszkowski U.
Curr. Opin. Plant Biol. 2021 62 102071
Conditioning plants for arbuscular mycorrhizal symbiosis through DWARF14-LIKE signalling.
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Shindo M., Yamamoto S., Shimomura K., Umehara M.
Front Plant Sci 2020 11 135
Strigolactones Decrease leaf angle in Response to Nutrient Deficiencies in Rice.
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Zhang S., Zhu L., Shen C., Ji Z., Zhang H., Zhang T., Li Y., Yu J., Yang N., He Y., Tian Y., Wu K., Wu J., Harberd N.P., Zhao Y., Fu X., Wang S., Li S.
Plant Cell 2020
Natural allelic variation in a modulator of auxin homeostasis improves grain yield and nitrogen use efficiency in rice.
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Zhang Y.C., He R.R., Lian J.P., Zhou Y.F., Zhang F., Li Q.F., Yu Y., Feng Y.Z., Yang Y.W., Lei M.Q., He H., Zhang Z., Chen Y.Q.
Proc. Natl. Acad. Sci. U.S.A. 2020 117(1) 727-732
OsmiR528 regulates rice-pollen intine formation by targeting an uclacyanin to influence flavonoid metabolism.
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Zheng J., Hong K., Zeng L., Wang L., Kang S., Qu M., Dai J., Zou L., Zhu L., Tang Z., Meng X., Wang B., Hu J., Zeng D., Zhao Y., Cui P., Wang Q., Qian Q., Wang Y., Li J., Xiong G.
Plant Cell 2020 32(9) 2780-2805
Karrikin Signaling Acts Parallel to and Additively with Strigolactone Signaling to Regulate Rice Mesocotyl Elongation in Darkness.
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Fang Z., Ji Y., Hu J., Guo R., Sun S., Wang X.
Mol Plant 2020 13(4) 586-597
Strigolactones and Brassinosteroids Antagonistically Regulate the Stability of the D53-OsBZR1 Complex to Determine FC1 Expression in Rice Tillering.
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Choi J., Lee T., Cho J., Servante E.K., Pucker B., Summers W., Bowden S., Rahimi M., An K., An G., Bouwmeester H.J., Wallington E.J., Oldroyd G., Paszkowski U.
Nat Commun 2020 11(1) 2114
The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice.
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Tang W., Wells A Thompson
Curr. Genomics 2019 20(2) 100-114
OsmiR528 Enhances Cold Stress Tolerance by Repressing Expression of stress response-related transcription factor.Genes in Plant Cells.
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Wang J., Wu B., Lu K., Wei Q., Qian J., Chen Y., Fang Z.
Plant Physiol. 2019 180(2) 1031-1045
The Amino Acid Permease 5 (OsAAP5) Regulates tiller number and grain yield in Rice.
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Sun S., Wang T., Wang L., Li X., Jia Y., Liu C., Huang X., Xie W., Wang X.
Nat Commun 2018 9(1) 2523
Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling.
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Huang W., Bai G., Wang J., Zhu W., Zeng Q., Lu K., Sun S., Fang Z.
Front Plant Sci 2018 9 300
Two Splicing Variants of <i>OsNPF7.7</i> Regulate shoot branching and Nitrogen Utilization Efficiency in Rice.
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Shabek N., Ticchiarelli F., Mao H., Hinds T.R., Leyser O., Zheng N.
Nature 2018 563(7733) 652-656
Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling.
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Wang J., Lu K., Nie H., Zeng Q., Wu B., Qian J., Fang Z.
Rice (N Y) 2018 11(1) 12
Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.
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Wang Y.P., Tang S.Q., Chen H.Z., Wu Z.F., Zhang H., Duan E.C., Shi Q.H., Wu Z.M.
Plant Biol (Stuttg) 2017
Identification and molecular mapping of indica high-tillering dwarf mutant htd4, a mild phenotype allelic mutant of D14 in rice (Oryza sativa L.).
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Zheng L., Zhang C., Shi C., Yang Z., Wang Y., Zhou T., Sun F., Wang H., Zhao S., Qin Q., Qiao R., Ding Z., Wei C., Xie L., Wu J., Li Y.
PLoS Pathog. 2017 13(10) e1006662
Rice stripe virus NS3 protein regulates primary miRNA processing through association with the miRNA biogenesis factor OsDRB1 and facilitates virus infection in rice.
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Zhou J., Deng K., Cheng Y., Zhong Z., Tian L., Tang X., Tang A., Zheng X., Zhang T., Qi Y., Zhang Y.
Front Plant Sci 2017 8 1598
CRISPR-Cas9 Based Genome Editing Reveals New Insights into MicroRNA Function and Regulation in Rice.
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Deshpande G.M., Ramakrishna K., Chongloi G.L., Vijayraghavan U.
J. Exp. Bot. 2015 66(9) 2773-84
Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
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Chen Z., Gao X., Zhang J.
Plant Cell Rep. 2015 34(5) 767-81
Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway.
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Sun H., Tao J., Liu S., Huang S., Chen S., Xie X., Yoneyama K., Zhang Y., Xu G.
J. Exp. Bot. 2014
Strigolactones are involved in phosphate- and nitrate-deficiency-induced root development and auxin transport in rice.
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Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014 537(1) 1-5
Tillering and panicle branching genes in rice.
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Sang D., Chen D., Liu G., Liang Y., Huang L., Meng X., Chu J., Sun X., Dong G., Yuan Y., Qian Q., Li J., Wang Y.
Proc. Natl. Acad. Sci. U.S.A. 2014 111(30) 11199-204
Strigolactones regulate rice tiller angle by attenuating shoot gravitropism through inhibiting auxin biosynthesis.
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Zhao J., Wang T., Wang M., Liu Y., Yuan S., Gao Y., Yin L., Sun W., Peng L., Zhang W., Wan J., Li X.
Plant Cell Physiol. 2014 55(6) 1096-109
DWARF3 participates in an SCF complex and associates with DWARF14 to suppress rice shoot branching.
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Lee S.H., Sakuraba Y., Lee T., Kim K.W., An G., Lee H.Y., Paek N.C.
J Integr Plant Biol 2014
Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.
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Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013 16(2) 213-20
Genes offering the potential for designing yield-related traits in rice.
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Jiang L., Liu X., Xiong G., Liu H., Chen F., Wang L., Meng X., Liu G., Yu H., Yuan Y., Yi W., Zhao L., Ma H., He Y., Wu Z., Melcher K., Qian Q., H.EricXu, Wang Y., Li J.
Nature 2013 504 401-405
DWARF 53 acts as a repressor of strigolactone signalling in rice
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Challis R.J., Hepworth J., Mouchel C., Waites R., Leyser O.
Plant Physiol. 2013 161(4) 1885-902
A Role for MORE AXILLARY GROWTH1 (MAX1) in Evolutionary Diversity in Strigolactone Signaling Upstream of MAX2.
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Smith S.M.
Nature 2013 504(7480) 384-5
Plant biology: Witchcraft and destruction.
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Zhou F.a b, Lin Q.b, Zhu L.a, Ren Y.b, Zhou K.a, Shabek N.c d, Wu F.b, Mao H.c d, Dong W.b, Gan L.b, Ma W.b, Gao H.a, Chen J.b, Yang C.a, Wang D.b, Tan J.b, Zhang X.b, Guo X.b, Wang J.b, Jiang L.a, Liu X.a, Chen W.e, Chu J.e, Yan C.f, Ueno K.f, Ito S.f, Asami T.b, Cheng Z.b, Wang J.b, Lei C.b, Zhai H.b, Wu C.b, Wang H.b, Zheng N.c d, Wan J.a b
Nature 2013 504 406-410
D14-SCF D3 -dependent degradation of D53 regulates strigolactone signalling
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Hua Z., Zou C., Shin-Han Shiu, Richard D Vierstra
PLoS ONE 2011 6(1) e16219
Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift.
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Xu G., Ma H., Nei M., Kong H.
Proc. Natl. Acad. Sci. U.S.A. 2009 106(3) 835-40
Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification.
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Gao Z,Qian Q,Liu X,Yan M,Feng Q,Dong G,Liu J,Han B
Plant Mol. Biol. 2009 71(3) 265-76
Dwarf 88, a novel putative esterase gene affecting architecture of rice plant.
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Umehara M., Hanada A., Yoshida S., Akiyama K., Arite T., Noriko Takeda-Kamiya, Magome H., Kamiya Y., Shirasu K., Yoneyama K., KYOZUKA J., Yamaguchi S.
Nature 2008 455(7210) 195-200
Inhibition of shoot branching by new terpenoid plant hormones.
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Arite T, Iwata H, Ohshima K, Maekawa M, Nakajima M, Kojima M, Sakakibara H, Kyozuka J.
Plant J. 2007 51(6) 1019-1029
DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.
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Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP.
Plant Physiol. 2007 143(4) 1467-1483
F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress.
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Zou J, Zhang S, Zhang W, Li G, Chen Z, Zhai W, Zhao X, Pan X, Xie Q, Zhu L.
Plant J. 2006 48(5) 687-696
The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds.
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Maekawa M, Takamure I, Ahmed N, Kyozuka J.
Breeding Science 2005 55(2) 193-196
Bunketsu-waito, One of the Tillering Dwarfs, is Controlled by a Single Recessive Gene in Rice (Oryza sativa L.)
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Ishikawa S, Maekawa M, Arite T, Onishi K, Takamure I, Kyozuka J.
Plant Cell Physiol. 2005 46(1) 79-86
Suppression of Tiller Bud Activity in Tillering Dwarf Mutants of Rice
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Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984 187-274.
Gene analysis and linkage map.
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Takahashi, M. and T. Kinoshita
Res. Bull. Univ. Farm Hokkaido Univ. 1974 19 41-50.
Genic identification on the forms of the tillering dwarf rice. -Genetical studies on rice plant, LIX-.
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Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963 53(1) 72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
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Nagao, S.
Adv. Genet. 1951 4 181-212.
Genic analysis and linkage relationship of characters in rice.
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TextPresso Search
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Search textpresso for D3
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060186
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Ontologies
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Gene Ontology
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negative gravitropism( GO:0009959 )
leaf senescence( GO:0010150 )
response to salt stress( GO:0009651 )
response to symbiotic fungus( GO:0009610 )
response to absence of light( GO:0009646 )
response to starvation( GO:0042594 )
secondary shoot formation( GO:0010223 )
symbiosis, encompassing mutualism through parasitism( GO:0044403 )
lateral root development( GO:0048527 )
multicellular organismal development( GO:0007275 )
auxin polar transport( GO:0009926 )
regulation of meristem structural organization( GO:0009934 )
shoot morphogenesis( GO:0010016 )
nucleus( GO:0005634 )
response to light stimulus( GO:0009416 )
auxin biosynthetic process( GO:0009851 )
response to water deprivation( GO:0009414 )
hormone-mediated signaling( GO:0009755 )
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Trait Ontology
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leaf senescence( TO:0000249 )
stem length( TO:0000576 )
lateral root number( TO:0001013 )
mesocotyl length( TO:0000544 )
tillering ability( TO:0000329 )
stem elongation( TO:0006036 )
light intensity sensitivity( TO:0000460 )
plant height( TO:0000207 )
tiller angle( TO:0000567 )
gravity response trait( TO:0002693 )
shoot branching( TO:0002639 )
panicle number( TO:0000152 )
shoot anatomy and morphology trait( TO:0000077 )
plant growth hormone sensitivity( TO:0000401 )
nitrogen sensitivity( TO:0000011 )
seminal root length( TO:0000586 )
salt tolerance( TO:0006001 )
auxin content( TO:0002672 )
leaf lamina joint bending( TO:0002688 )
tiller number( TO:0000346 )
leaf width( TO:0000370 )
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Plant Ontology
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axillary shoot system( PO:0006343 )
vascular leaf( PO:0009025 )
stem( PO:0009047 )
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Related Strains
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Phenotype images
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Last updated
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Mar 15, 2023
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