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Basic Information
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CGSNL Gene Symbol
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D3
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Gene Symbol Synonym
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d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3
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CGSNL Gene Name
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DWARF BUNKETSUWAITO TILLERING
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Gene Name Synonym
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bunketsuwaito tillering dwarf, dwarf-3, F-box/LRR-repeat MAX2 homolog, F-box and leucine-rich repeat MAX2 homolog, DWARF 3, DWARF-3, suppressor of lazy1, DWARF3, ORESARA 9, MAX2 ortholog
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Protein Name
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F-BOX/LRR-REPEAT MAX2 HOMOLOG
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Allele
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d3, d3-1, d3-2, sol1, sol1-1, sol1-2, d3 300097, gsor300097
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Chromosome No.
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6
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Explanation
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Profuse tillering with slender leaves. Duplicate or triplicate. Q5VMP0. PO:0009047; stem ; PO:0006343; axillary shoot ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. F-box protein. LOC_Os06g06050. a rice homolog of Arabidopsis ORESARA 1. LOC_Os06g06050. an F-box component of the Skp-Cullin-F-box (SCF) E3 ubiquitin ligase complex. GO:0090548: response to nitrate starvation.
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Trait Class
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Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK065478
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MSU ID
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LOC_Os06g06050.1
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RAP ID
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Os06g0154200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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168.0
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Link map
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Classical linkage map
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References
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Sun S., Wang T., Wang L., Li X., Jia Y., Liu C., Huang X., Xie W., Wang X.
Nat Commun 2018 9(1) 2523
Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling.
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Shabek N., Ticchiarelli F., Mao H., Hinds T.R., Leyser O., Zheng N.
Nature 2018 563(7733) 652-656
Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling.
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Huang W., Bai G., Wang J., Zhu W., Zeng Q., Lu K., Sun S., Fang Z.
Front Plant Sci 2018 9 300
Two Splicing Variants of <i>OsNPF7.7</i> Regulate shoot branching and Nitrogen Utilization Efficiency in Rice.
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Wang J., Lu K., Nie H., Zeng Q., Wu B., Qian J., Fang Z.
Rice (N Y) 2018 11(1) 12
Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.
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Zhou J., Deng K., Cheng Y., Zhong Z., Tian L., Tang X., Tang A., Zheng X., Zhang T., Qi Y., Zhang Y.
Front Plant Sci 2017 8 1598
CRISPR-Cas9 Based Genome Editing Reveals New Insights into MicroRNA Function and Regulation in Rice.
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Zheng L., Zhang C., Shi C., Yang Z., Wang Y., Zhou T., Sun F., Wang H., Zhao S., Qin Q., Qiao R., Ding Z., Wei C., Xie L., Wu J., Li Y.
PLoS Pathog. 2017 13(10) e1006662
Rice stripe virus NS3 protein regulates primary miRNA processing through association with the miRNA biogenesis factor OsDRB1 and facilitates virus infection in rice.
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Wang Y.P., Tang S.Q., Chen H.Z., Wu Z.F., Zhang H., Duan E.C., Shi Q.H., Wu Z.M.
Plant Biol (Stuttg) 2017
Identification and molecular mapping of indica high-tillering dwarf mutant htd4, a mild phenotype allelic mutant of D14 in rice (Oryza sativa L.).
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Deshpande G.M., Ramakrishna K., Chongloi G.L., Vijayraghavan U.
J. Exp. Bot. 2015 66(9) 2773-84
Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
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Chen Z., Gao X., Zhang J.
Plant Cell Rep. 2015 34(5) 767-81
Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway.
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Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014 537(1) 1-5
Tillering and panicle branching genes in rice.
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Zhao J., Wang T., Wang M., Liu Y., Yuan S., Gao Y., Yin L., Sun W., Peng L., Zhang W., Wan J., Li X.
Plant Cell Physiol. 2014 55(6) 1096-109
DWARF3 participates in an SCF complex and associates with DWARF14 to suppress rice shoot branching.
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Sun H., Tao J., Liu S., Huang S., Chen S., Xie X., Yoneyama K., Zhang Y., Xu G.
J. Exp. Bot. 2014
Strigolactones are involved in phosphate- and nitrate-deficiency-induced root development and auxin transport in rice.
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Sang D., Chen D., Liu G., Liang Y., Huang L., Meng X., Chu J., Sun X., Dong G., Yuan Y., Qian Q., Li J., Wang Y.
Proc. Natl. Acad. Sci. U.S.A. 2014 111(30) 11199-204
Strigolactones regulate rice tiller angle by attenuating shoot gravitropism through inhibiting auxin biosynthesis.
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Lee S.H., Sakuraba Y., Lee T., Kim K.W., An G., Lee H.Y., Paek N.C.
J Integr Plant Biol 2014
Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.
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Smith S.M.
Nature 2013 504(7480) 384-5
Plant biology: Witchcraft and destruction.
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Challis R.J., Hepworth J., Mouchel C., Waites R., Leyser O.
Plant Physiol. 2013 161(4) 1885-902
A Role for MORE AXILLARY GROWTH1 (MAX1) in Evolutionary Diversity in Strigolactone Signaling Upstream of MAX2.
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Jiang L., Liu X., Xiong G., Liu H., Chen F., Wang L., Meng X., Liu G., Yu H., Yuan Y., Yi W., Zhao L., Ma H., He Y., Wu Z., Melcher K., Qian Q., H.EricXu, Wang Y., Li J.
Nature 2013 504 401-405
DWARF 53 acts as a repressor of strigolactone signalling in rice
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Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013 16(2) 213-20
Genes offering the potential for designing yield-related traits in rice.
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Zhou F.a b, Lin Q.b, Zhu L.a, Ren Y.b, Zhou K.a, Shabek N.c d, Wu F.b, Mao H.c d, Dong W.b, Gan L.b, Ma W.b, Gao H.a, Chen J.b, Yang C.a, Wang D.b, Tan J.b, Zhang X.b, Guo X.b, Wang J.b, Jiang L.a, Liu X.a, Chen W.e, Chu J.e, Yan C.f, Ueno K.f, Ito S.f, Asami T.b, Cheng Z.b, Wang J.b, Lei C.b, Zhai H.b, Wu C.b, Wang H.b, Zheng N.c d, Wan J.a b
Nature 2013 504 406-410
D14-SCF D3 -dependent degradation of D53 regulates strigolactone signalling
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Hua Z., Zou C., Shin-Han Shiu, Richard D Vierstra
PLoS ONE 2011 6(1) e16219
Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift.
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Gao Z,Qian Q,Liu X,Yan M,Feng Q,Dong G,Liu J,Han B
Plant Mol. Biol. 2009 71(3) 265-76
Dwarf 88, a novel putative esterase gene affecting architecture of rice plant.
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Xu G., Ma H., Nei M., Kong H.
Proc. Natl. Acad. Sci. U.S.A. 2009 106(3) 835-40
Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification.
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Umehara M., Hanada A., Yoshida S., Akiyama K., Arite T., Noriko Takeda-Kamiya, Magome H., Kamiya Y., Shirasu K., Yoneyama K., KYOZUKA J., Yamaguchi S.
Nature 2008 455(7210) 195-200
Inhibition of shoot branching by new terpenoid plant hormones.
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Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP.
Plant Physiol. 2007 143(4) 1467-1483
F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress.
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Arite T, Iwata H, Ohshima K, Maekawa M, Nakajima M, Kojima M, Sakakibara H, Kyozuka J.
Plant J. 2007 51(6) 1019-1029
DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.
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Zou J, Zhang S, Zhang W, Li G, Chen Z, Zhai W, Zhao X, Pan X, Xie Q, Zhu L.
Plant J. 2006 48(5) 687-696
The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds.
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Ishikawa S, Maekawa M, Arite T, Onishi K, Takamure I, Kyozuka J.
Plant Cell Physiol. 2005 46(1) 79-86
Suppression of Tiller Bud Activity in Tillering Dwarf Mutants of Rice
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Maekawa M, Takamure I, Ahmed N, Kyozuka J.
Breeding Science 2005 55(2) 193-196
Bunketsu-waito, One of the Tillering Dwarfs, is Controlled by a Single Recessive Gene in Rice (Oryza sativa L.)
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Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984 187-274.
Gene analysis and linkage map.
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Takahashi, M. and T. Kinoshita
Res. Bull. Univ. Farm Hokkaido Univ. 1974 19 41-50.
Genic identification on the forms of the tillering dwarf rice. -Genetical studies on rice plant, LIX-.
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Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963 53(1) 72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
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Nagao, S.
Adv. Genet. 1951 4 181-212.
Genic analysis and linkage relationship of characters in rice.
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TextPresso Search
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Search textpresso for D3
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060186
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Ontologies
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Gene Ontology
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nucleus( GO:0005634 )
response to light stimulus( GO:0009416 )
auxin biosynthetic process( GO:0009851 )
negative gravitropism( GO:0009959 )
leaf senescence( GO:0010150 )
multicellular organismal development( GO:0007275 )
auxin polar transport( GO:0009926 )
regulation of meristem structural organization( GO:0009934 )
shoot morphogenesis( GO:0010016 )
secondary shoot formation( GO:0010223 )
response to water deprivation( GO:0009414 )
hormone-mediated signaling( GO:0009755 )
response to salt stress( GO:0009651 )
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Trait Ontology
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leaf width( TO:0000370 )
plant height( TO:0000207 )
tiller angle( TO:0000567 )
gravity response trait( TO:0002693 )
auxin content( TO:0002672 )
shoot branching( TO:0002639 )
leaf senescence( TO:0000249 )
stem length( TO:0000576 )
tiller number( TO:0000346 )
panicle number( TO:0000152 )
shoot anatomy and morphology trait( TO:0000077 )
plant growth hormone sensitivity( TO:0000401 )
nitrogen sensitivity( TO:0000011 )
lateral root number( TO:0001013 )
seminal root length( TO:0000586 )
salt tolerance( TO:0006001 )
mesocotyl length( TO:0000544 )
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Plant Ontology
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axillary shoot system( PO:0006343 )
vascular leaf( PO:0009025 )
stem( PO:0009047 )
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Related Strains
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Phenotype images
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Last updated
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Jul 20, 2019
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