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Basic Information
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CGSNL Gene Symbol
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LHD3
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Gene Symbol Synonym
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PHYC, OsPHYC, OsPHYCa, OsPHYCb, OsLHD3
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CGSNL Gene Name
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LATE HEADING DATE 3
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Gene Name Synonym
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PhytochromeC, Phytochrome C, late heading date 3
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Protein Name
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PHYTOCHROME C
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Allele
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phyC-1, lhd3
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Chromosome No.
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3
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Explanation
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A2XM23(indica), Q10CQ8(japonica). AB018442(Japonica). U61207. a rice ortholog of Arabidopsis gene for circadian clock component.
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Trait Class
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Biochemical character
Vegetative organ - Leaf
Reproductive organ - Heading date
Coloration - Chlorophyll
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK060467
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MSU ID
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LOC_Os03g54084.1
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RAP ID
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Os03g0752100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Lin X., Huang Y., Rao Y., Ouyang L., Zhou D., Zhu C., Fu J., Chen C., Yin J., Bian J., He H., Zou G., Xu J.
BMC Plant Biol. 2022 22(1) 612
A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.
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Matsuzaki J., Kawahara Y., Izawa T.
Plant Cell 2015 27(3) 633-48
Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions.
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Hirose F., Inagaki N., Takano M.
Plant Signal Behav 2013 8(3)
Differences and similarities in the photoregulation of gibberellin metabolism between rice and dicots.
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Takano M,Inagaki N,Xie X,Kiyota S,Baba-Kasai A,Tanabata T,Shinomura T
Proc. Natl. Acad. Sci. U.S.A. 2009 106(34) 14705-10
Phytochromes are the sole photoreceptors for perceiving red/far-red light in rice.
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Pareek A, Singh A, Kumar M, Kushwaha HR, Lynn AM, Singla-Pareek SL.
Plant Physiol. 2006 142(2) 380-97
Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis.
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Ishikawa R., Tamaki S., Yokoi S., Inagaki N., Shinomura T., Takano M., Shimamoto K.
Plant Cell 2005 17(12) 3326-36
Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice.
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Takano,M., Inagaki,N., Xie,X., Yuzurihara,N., Hihara,F., Ishizuka,T., Yano,M., Nishimura,M., Miyao,A., Hirochika,H. and Shinomura,T.
Plant Cell 2005 17(12) 3311-3325
Distinct and cooperative functions of phytochromes a, B, and C in the control of deetiolation and flowering in rice.
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Basu,D., Dehesh,K., Schneider-Poetsch,H.J., Harrington,S.E., McCouch,S.R. and Quail,P.H.
Plant Mol. Biol. 2000 44(1) 27-42
Rice PHYC gene: structure, expression, map position and evolution.
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Mathews,S. and Sharrock,R.A.
Mol. Biol. Evol. 1996 13(8) 1141-1150
The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms.
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TextPresso Search
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Search textpresso for LHD3
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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vegetative to reproductive phase transition( GO:0010228 )
regulation of timing of transition from vegetative to reproductive phase( GO:0048510 )
response to absence of light( GO:0009646 )
response to light stimulus( GO:0009416 )
photoperiodism( GO:0009648 )
regulation of chlorophyll biosynthetic process( GO:0010380 )
long-day photoperiodism, flowering( GO:0048574 )
short-day photoperiodism, flowering( GO:0048575 )
photoperiodism, flowering( GO:0048573 )
transcription( GO:0006350 )
red, far-red light phototransduction( GO:0009585 )
regulation of transcription, DNA-dependent( GO:0006355 )
sensory perception( GO:0007600 )
membrane( GO:0016020 )
protein-tetrapyrrole linkage( GO:0017006 )
peptidyl-histidine phosphorylation( GO:0018106 )
protein-chromophore linkage( GO:0018298 )
protein homodimerization activity( GO:0042803 )
two-component sensor activity( GO:0000155 )
ATP binding( GO:0005524 )
G-protein coupled photoreceptor activity( GO:0008020 )
circadian rhythm( GO:0007623 )
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Trait Ontology
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flowering time( TO:0002616 )
days to heading( TO:0000137 )
light sensitivity( TO:0000075 )
light intensity sensitivity( TO:0000460 )
leaf color( TO:0000326 )
chlorophyll content( TO:0000495 )
leaf number( TO:0000241 )
tiller number( TO:0000346 )
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Plant Ontology
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-
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Related Strains
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-
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Phenotype images
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-
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Last updated
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Jun 7, 2023
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