Gene - Detail
Detail of Gene
Basic Information | |
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CGSNL Gene Symbol | SNG |
Gene Symbol Synonym | OsTubA1, TubA1, OS-TubA3, TubA3, OsTUBA3, OsSNG |
CGSNL Gene Name | SMALL AND NOTCHED GRAIN |
Gene Name Synonym | Tubulin alpha-1 chain, Tubulin alpha-1, Small and notched grain |
Protein Name | TUBULIN ALPHA-1 CHAIN |
Allele | Sng |
Chromosome No. | 7 |
Explanation | X91808. P28752. OS-TubA3 in Qin et al. 1997, Xu et al. 2023. tubulin/FtsZ domain- containing protein. PO:0030104: caryopsis fruit. TO:0000975: grain width. |
Trait Class |
Biochemical character
Seed - Morphological traits - Grain shape Seed - Physiological traits - Dormancy Tolerance and resistance - Stress tolerance Character as QTL - Grain quality Character as QTL - Yield and productivity |
Expression | |
Sequence/Locus | |
cDNA Accession No. |
AK069140
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MSU ID |
LOC_Os07g38730.1
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RAP ID |
Os07g0574800 |
Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
INSD Accession List (Test version) |
Link to INSD Accession List |
Map | |
Locate(cM) | |
Link map | Classical linkage map |
References | |
Chen S., De Zutter N., Meijer A., Gistelinck K., Wytynck P., Verbeke I., Osterne V.J.S., Kondeti S., De Meyer T., Audenaert K., Van Damme EJM.
Front Plant Sci 2024 15 1385477 Overexpression of the ribosome-inactivating protein <i>OsRIP1</i> modulates the jasmonate signaling pathway in rice.
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Xu C., Chen B., Huang S., Deng Z., Wang T.
New Phytol. 2023 240(3) 1052-1065 A point mutation in the rice alpha-tubulin gene OsTUBA3 causes grain notching.
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Fang C., Zhang P., Li L., Yang L., Mu D., Yan X., Li Z., Lin W.
BMC Plant Biol. 2020 20(1) 236 serine hydroxymethyltransferase localised in the endoplasmic reticulum plays a role in scavenging H2O2 to enhance rice chilling tolerance.
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Liu S.J., Xu H.H., Wang W.Q., Li N., Wang W.P., Møller IM., Song S.Q.
Physiol Plant 2014 A proteomic analysis of rice seed germination as affected by high temperature and ABA treatment.
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Song Y.a, Cui J.a, Zhang H.b, Wang G.a, Zhao F.J.c, Shen Z.a
Plant Soil 2013 366 647-658 Proteomic analysis of copper stress responses in the roots of two rice (Oryza sativa L.) varieties differing in Cu tolerance
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Jeon JS, Lee S, Jung KH, Jun SH, Kim C, An G.
Plant Physiol. 2000 123(3) 1005-1014 Tissue-preferential expression of a rice alpha-tubulin gene, OsTubA1, mediated by the first intron.
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X Qin, S Gianì, D Breviario
Biochim. Biophys. Acta 1997 1354(1) 19-23 Molecular cloning of three rice alpha-tubulin isotypes: differential expression in tissues and during flower development.
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DB Reference | |
Gramene ID | - |
Ontologies | |
Gene Ontology |
microtubule cytoskeleton organization( GO:0000226 )
microtubule polymerization( GO:0046785 ) microtubule nucleation( GO:0007020 ) regulation of cell growth( GO:0001558 ) inflorescence development( GO:0010229 ) organ growth( GO:0035265 ) seed development( GO:0048316 ) microtubule( GO:0005874 ) GTP binding( GO:0005525 ) GTPase activity( GO:0003924 ) structural molecule activity( GO:0005198 ) protein polymerization( GO:0051258 ) response to temperature stimulus( GO:0009266 ) seed germination( GO:0009845 ) cell growth( GO:0016049 ) microtubule-based movement( GO:0007018 ) response to copper ion( GO:0046688 ) structural constituent of cytoskeleton( GO:0005200 ) microtubule-based process( GO:0007017 ) cytoplasm( GO:0005737 ) |
Trait Ontology |
temperature response trait( TO:0000432 )
copper sensitivity( TO:0000021 ) seed development trait( TO:0000653 ) grain shape( TO:0002730 ) seed quality( TO:0000162 ) grain yield( TO:0000396 ) inflorescence development trait( TO:0000621 ) grain length( TO:0000734 ) grain thickness( TO:0000399 ) grain width( TO:0000402 ) 1000-seed weight( TO:0000382 ) chalky endosperm( TO:0000266 ) head rice( TO:0000222 ) plant height( TO:0000207 ) primary branch number( TO:0000547 ) filled grain number( TO:0000447 ) glume length( TO:0020033 ) |
Plant Ontology |
seed development stage( PO:0001170 )
leaf( PO:0025034 ) stem( PO:0009047 ) spikelet floret( PO:0009082 ) inflorescence development stage( PO:0001083 ) seed( PO:0009010 ) 0 seed germination stage( PO:0007057 ) |
Related Strains | |
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Phenotype images | |
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Last updated | |
Feb 26, 2025 |