Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SNG
Gene Symbol Synonym OsTubA1, TubA1, OS-TubA3, TubA3, OsTUBA3, OsSNG
CGSNL Gene Name SMALL AND NOTCHED GRAIN
Gene Name Synonym Tubulin alpha-1 chain, Tubulin alpha-1, Small and notched grain
Protein Name TUBULIN ALPHA-1 CHAIN
Allele Sng
Chromosome No. 7
Explanation X91808. P28752. OS-TubA3 in Qin et al. 1997, Xu et al. 2023. tubulin/FtsZ domain- containing protein. PO:0030104: caryopsis fruit. TO:0000975: grain width.
Trait Class Biochemical character
Seed - Morphological traits - Grain shape
Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Expression
Sequence/Locus
cDNA Accession No. AK069140
MSU ID LOC_Os07g38730.1
RAP ID Os07g0574800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Chen S., De Zutter N., Meijer A., Gistelinck K., Wytynck P., Verbeke I., Osterne V.J.S., Kondeti S., De Meyer T., Audenaert K., Van Damme EJM.
Front Plant Sci 2024  15  1385477
Overexpression of the ribosome-inactivating protein <i>OsRIP1</i> modulates the jasmonate signaling pathway in rice.
Xu C., Chen B., Huang S., Deng Z., Wang T.
New Phytol. 2023  240(3)  1052-1065
A point mutation in the rice alpha-tubulin gene OsTUBA3 causes grain notching.
Fang C., Zhang P., Li L., Yang L., Mu D., Yan X., Li Z., Lin W.
BMC Plant Biol. 2020  20(1)  236
serine hydroxymethyltransferase localised in the endoplasmic reticulum plays a role in scavenging H2O2 to enhance rice chilling tolerance.
Liu S.J., Xu H.H., Wang W.Q., Li N., Wang W.P., Møller IM., Song S.Q.
Physiol Plant 2014   
A proteomic analysis of rice seed germination as affected by high temperature and ABA treatment.
Song Y.a, Cui J.a, Zhang H.b, Wang G.a, Zhao F.J.c, Shen Z.a
Plant Soil 2013  366  647-658
Proteomic analysis of copper stress responses in the roots of two rice (Oryza sativa L.) varieties differing in Cu tolerance
Jeon JS, Lee S, Jung KH, Jun SH, Kim C, An G.
Plant Physiol. 2000  123(3)  1005-1014
Tissue-preferential expression of a rice alpha-tubulin gene, OsTubA1, mediated by the first intron.
X Qin, S Gianì, D Breviario
Biochim. Biophys. Acta 1997  1354(1)  19-23
Molecular cloning of three rice alpha-tubulin isotypes: differential expression in tissues and during flower development.
DB Reference
Gramene ID -
Ontologies
Gene Ontology microtubule cytoskeleton organization( GO:0000226 )
microtubule polymerization( GO:0046785 )
microtubule nucleation( GO:0007020 )
regulation of cell growth( GO:0001558 )
inflorescence development( GO:0010229 )
organ growth( GO:0035265 )
seed development( GO:0048316 )
microtubule( GO:0005874 )
GTP binding( GO:0005525 )
GTPase activity( GO:0003924 )
structural molecule activity( GO:0005198 )
protein polymerization( GO:0051258 )
response to temperature stimulus( GO:0009266 )
seed germination( GO:0009845 )
cell growth( GO:0016049 )
microtubule-based movement( GO:0007018 )
response to copper ion( GO:0046688 )
structural constituent of cytoskeleton( GO:0005200 )
microtubule-based process( GO:0007017 )
cytoplasm( GO:0005737 )
Trait Ontology temperature response trait( TO:0000432 )
copper sensitivity( TO:0000021 )
seed development trait( TO:0000653 )
grain shape( TO:0002730 )
seed quality( TO:0000162 )
grain yield( TO:0000396 )
inflorescence development trait( TO:0000621 )
grain length( TO:0000734 )
grain thickness( TO:0000399 )
grain width( TO:0000402 )
1000-seed weight( TO:0000382 )
chalky endosperm( TO:0000266 )
head rice( TO:0000222 )
plant height( TO:0000207 )
primary branch number( TO:0000547 )
filled grain number( TO:0000447 )
glume length( TO:0020033 )
Plant Ontology seed development stage( PO:0001170 )
leaf( PO:0025034 )
stem( PO:0009047 )
spikelet floret( PO:0009082 )
inflorescence development stage( PO:0001083 )
seed( PO:0009010 )
0 seed germination stage( PO:0007057 )
Related Strains
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Phenotype images
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Last updated
Feb 26, 2025

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