Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol TPP1
Gene Symbol Synonym OsTPP1, OsTPS, TPP
Gene Name Synonym Trehalose-6-phosphate phosphatase 1, trehalose 6-P synthase, Tre6P phosphatase 1
Allele tpp1
Chromosome No. 2
Explanation Q75WV3. AB120515. BAD12596. EU559275.
Trait Class Character as QTL - Germination
Seed - Morphological traits - Grain shape
Biochemical character
Vegetative organ - Culm
Character as QTL - Yield and productivity
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK059390
MSU ID LOC_Os02g44230.1
RAP ID Os02g0661100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Li Z., Wei X., Tong X., Zhao J., Liu X., Wang H., Tang L., Shu Y., Li G., Wang Y., Ying J., Jiao G., Hu H., Hu P., Zhang J.
Mol Plant 2022  15(4)  706-722
The OsNAC23-Tre6P-SnRK1a feed-forward loop regulates sugar homeostasis and grain yield in rice.
Wang D., Li J., Sun L., Hu Y., Yu J., Wang C., Zhang F., Hou H., Liang W., Zhang D.
New Phytol. 2021  231(4)  1612-1629
Two rice MYB transcription factors maintain male fertility in response to photoperiod by modulating sugar partitioning.
Xia C., Gong Y., Chong K., Xu Y.
Plant Cell Environ. 2021  44(2)  491-505
Phosphatase OsPP2C27 directly dephosphorylates OsMAPK3 and OsbHLH002 to negatively regulate cold tolerance in rice.
Wang G., Li X., Ye N., Huang M., Feng L., Li H., Zhang J.
New Phytol. 2021  230(5)  1925-1939
OsTPP1 regulates seed germination through the crosstalk with abscisic acid in rice.
Fang J.C., Tsai Y.C., Chou W.L., Liu H.Y., Chang C.C., Wu S.J., Lu C.A.
Plant Mol. Biol. 2021  105(1-2)  177-192
A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings.
Pandey M., Paladi R.K., Srivastava A.K., Suprasanna P.
Sci Rep 2021  11(1)  3000
Thiourea and hydrogen peroxide priming improved K+ retention and source-sink relationship for mitigating salt stress in rice.
Verma R.K., Kumar V.V.S., Yadav S.K., Kumar T.S., Rao M.V., Chinnusamy V.
Plant Signal Behav 2020  15(11)  1814547
Overexpression of Arabidopsis <i>ICE1</i> enhances yield and multiple abiotic stress tolerance in indica rice.
Verma R.K., Santosh Kumar VV., Yadav S.K., Pushkar S., Rao M.V., Chinnusamy V.
Front Plant Sci 2019  10  1488
Overexpression of ABA Receptor <i>PYL10</i> Gene Confers Drought and Cold Tolerance to Indica Rice.
de Freitas GM., Thomas J., Liyanage R., Lay J.O., Basu S., Ramegowda V., do Amaral MN., Benitez L.C., Bolacel Braga EJ., Pereira A.
PLoS ONE 2019  14(6)  e0218019
cold tolerance response mechanisms revealed through comparative analysis of gene and protein expression in multiple rice genotypes.
Ye N.H., Wang F.Z., Shi L., Chen M.X., Cao Y.Y., Zhu F.Y., Wu Y.Z., Xie L.J., Liu T.Y., Su Z.Z., Xiao S., Zhang H., Yang J., Gu H.Y., Hou X.X., Hu Q.J., Yi H.J., Zhu C.X., Zhang J., Liu Y.G.
Plant J. 2018  94(4)  612-625
Natural variation in the promoter of rice calcineurin B-like protein10 (OsCBL10) affects flooding tolerance during seed germination among rice subspecies.
Li S., Tian Y., Wu K., Ye Y., Yu J., Zhang J., Liu Q., Hu M., Li H., Tong Y., Harberd N.P., Fu X.
Nature 2018  560(7720)  595-600
Modulating plant growth-metabolism coordination for sustainable agriculture.
Zhang Z., Li J., Li F., Liu H., Yang W., Chong K., Xu Y.
Dev. Cell 2017  43(6)  731-743.e5
OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.
Man L., Xiang D., Wang L., Zhang W., Wang X., Qi G.
Protoplasma 2016   
Stress-responsive gene RsICE1 from Raphanus sativus increases cold tolerance in rice.
Wang S.T., Sun X.L., Hoshino Y., Yu Y., Jia B., Sun Z.W., Sun M.Z., Duan X.B., Zhu Y.M.
PLoS ONE 2014  9(3)  e91357
MicroRNA319 Positively Regulates Cold Tolerance by Targeting OsPCF6 and OsTCP21 in Rice (Oryza sativa L.).
Liu H., Ma Y., Chen N., Guo S., Liu H., Guo X., Chong K., Xu Y.
Plant Cell Environ. 2013   
Overexpression of stress-inducible OsBURP16, the beta-subunit of polygalacturonase 1, decreases pectin contents and cell adhesion, and increases abiotic stress sensitivity in rice.
Pandey D.M., Kim S.R.
Journal of Plant Biology 2012  55  489-497
Identification and expression analysis of hypoxia stress inducible CCCH-type zinc finger protein genes in rice
Liu C., Wu Y., Wang X.
Planta 2012  235(6)  1157-69
bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice.
Nakamura J., Yuasa T., Tran Thi Huong, Harano K., Tanaka S., Iwata T., Phan T., Iwaya M.
Plant Biotechnology 2011  28(3)  303-309
Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation
Li H.W. , Zang B.S. , Deng X.W. , Wang X.P.
Planta. 2011  234(5)  1007-1018
Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice.
Su CF,Wang YC,Hsieh TH,Lu CA,Tseng TH,Yu SM
Plant Physiol. 2010  153  145-58
A novel MYBS3-dependent pathway confers cold tolerance in rice.
Iordachescu M., Imai R.
J Integr Plant Biol 2008  50(10)  1223-9
Trehalose biosynthesis in response to abiotic stresses.
Ge,L.F., Chao,D.Y., Shi,M., Zhu,M.Z., Gao,J.P. and Lin,H.X.
Planta. 2008  228(1)  191-201
Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes
Shima S, Matsui H, Tahara S, Imai R.
FEBS J. 2007  274(5)  1192-201.
Biochemical characterization of rice trehalose-6-phosphate phosphatases supports distinctive functions of these plant enzymes.
Pramanik,M.H. and Imai,R.
Plant Mol. Biol. 2005  58(6)  751-762
Functional Identification of a Trehalose 6-phosphate Phosphatase Gene that is Involved in Transient Induction of Trehalose Biosynthesis during Chilling Stress in Rice.
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DB Reference
Gramene ID -
Gene Ontology trehalose-phosphatase activity( GO:0004805 )
response to hydrogen peroxide( GO:0042542 )
response to salt stress( GO:0009651 )
response to osmotic stress( GO:0006970 )
sugar mediated signaling( GO:0010182 )
carbohydrate homeostasis( GO:0033500 )
regulation of seed germination( GO:0010029 )
abscisic acid mediated signaling( GO:0009738 )
abscisic acid catabolic process( GO:0046345 )
response to abscisic acid stimulus( GO:0009737 )
response to trehalose stimulus( GO:0010353 )
response to flooding( GO:0009413 )
trehalose metabolism in response to cold stress( GO:0070415 )
response to cold( GO:0009409 )
trehalose biosynthetic process( GO:0005992 )
Trait Ontology osmotic response sensitivity( TO:0000095 )
photosynthetic rate( TO:0001015 )
carbohydrate content( TO:0000291 )
transpiration rate( TO:0001018 )
plant height( TO:0000207 )
grain number( TO:0002759 )
grain size( TO:0000397 )
grain yield( TO:0000396 )
oligosaccharide content( TO:0006003 )
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 )
germination rate( TO:0000430 )
abscisic acid content( TO:0002667 )
abscisic acid sensitivity( TO:0000615 )
root length( TO:0000227 )
flooding related trait( TO:0000114 )
Plant Ontology 0 seed germination stage( PO:0007057 )
Related Strains
Phenotype images
Last updated
Mar 21, 2023