Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol HTNE
Gene Symbol Synonym NRT2.3, OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5
Gene Name Synonym high-affinity nitrate transporter 2.3, high temperature resistant and nitrogen efficient
Allele HTNE-1, HTNE-2, HTNE-3
Chromosome No. 1
Explanation OsNRT2;1 and OsNRT2;3a in Yan et al. 2014. OsNRT2;3a in Liu et al. 2014. OsNRT2;1 in Yang et al. 2014. OsNRT2.5 in Plett et al. 2010. TO:0020096: mineral and ion transport trait. TO:0000952: stem weight. GO:0090408: phloem nitrate loading. TO:0020100: nitrate uptake. TO:0020094: nitrate content.
Trait Class Biochemical character
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Character as QTL - Plant growth activity
cDNA Accession No. AK109776
MSU ID LOC_Os01g50820.1
RAP ID Os01g0704100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Iqbal M.F., Zhang Y., Kong P., Wang Y., Cao K., Zhao L., Xiao X., Fan X.
Front Plant Sci 2023  14  1133643
High-yielding nitrate transporter cultivars also mitigate methane and nitrous oxide emissions in paddy.
Zhang Y., Tateishi-Karimata H., Endoh T., Jin Q., Li K., Fan X., Ma Y., Gao L., Lu H., Wang Z., Cho A.E., Yao X., Liu C., Sugimoto N., Guo S., Fu X., Shen Q., Xu G., Herrera-Estrella LR., Fan X.
Sci Adv 2022  8(47)  eadc9785
High-temperature adaptation of an <i>OsNRT2.3</i> allele is thermoregulated by small RNAs.
Cui X., He H., Hu S., Zhang B., Cai H.
Plants (Basel) 2022  11(19) 
Synergistic Interaction between Copper and Nitrogen-Uptake, Translocation, and Distribution in Rice Plant.
Zhang Y., Iqbal M.F., Wang Y., Qian K., Xiang J., Xu G., Fan X.
Int J Mol Sci 2022  23(18) 
OsTBP2.1, a TATA-binding protein, Alters the Ratio of <i>OsNRT2.3b</i> to <i>OsNRT2.3a</i> and Improves Rice grain yield.
Luo B., Xu M., Zhao L., Xie P., Chen Y., Harwood W., Xu G., Fan X., Miller A.J.
Int J Mol Sci 2020  21(4) 
Overexpression of the High-Affinity Nitrate Transporter <i>OsNRT2.3b</i> Driven by Different Promoters in Barley Improves Yield and Nutrient Uptake Balance.
Liu R., Jia T., Cui B., Song J.
Plant Signal Behav 2020  15(12)  1815980
The expression patterns and putative function of nitrate transporter 2.5 in plants.
Chen J., Liu X., Liu S., Fan X., Zhao L., Song M., Fan X., Xu G.
Front Plant Sci 2020  11  1245
Co-Overexpression of <i>OsNAR2.1</i> and <i>OsNRT2.3a</i> Increased Agronomic Nitrogen Use Efficiency in Transgenic Rice Plants.
Zhang S., Zhu L., Shen C., Ji Z., Zhang H., Zhang T., Li Y., Yu J., Yang N., He Y., Tian Y., Wu K., Wu J., Harberd N.P., Zhao Y., Fu X., Wang S., Li S.
Plant Cell 2020   
Natural allelic variation in a modulator of auxin homeostasis improves grain yield and nitrogen use efficiency in rice.
Paul K., Saha C., Nag M., Mandal D., Naiya H., Sen D., Mitra S., Kumar M., Bose D., Mukherjee G., Naskar N., Lahiri S., Das Ghosh U., Tripathi S., Sarkar M.P., Banerjee M., Kleinert A., Valentine A.J., Tripathy S., Sinharoy S., Seal A.
Plant Cell 2020  32(2)  486-507
A Tripartite Interaction among the Basidiomycete <i>Rhodotorula mucilaginosa</i>, N2-Fixing Endobacteria, and Rice Improves Plant Nitrogen Nutrition.
Wang P., Yamaji N., Inoue K., Mochida K., Ma J.F.
New Phytol. 2020  226(1)  156-169
Plastic transport systems of rice for mineral elements in response to diverse soil environmental changes.
Chen J., Qi T., Hu Z., Fan X., Zhu L., Iqbal M.F., Yin X., Xu G., Fan X.
Front Plant Sci 2019  10  197
<i>OsNAR2.1</i> Positively Regulates drought tolerance and grain yield Under Drought Stress Conditions in Rice.
Huang S., Liang Z., Chen S., Sun H., Fan X., Wang C., Xu G., Zhang Y.
Plant Physiol. 2019  180(2)  882-895
A Transcription Factor, OsMADS57, Regulates Long-Distance Nitrate Transport and Root Elongation.
Pei W., Jain A., Ai H., Liu X., Feng B., Wang X., Sun Y., Xu G., Sun S.
J. Plant Physiol. 2019  232  51-60
OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.
Wei J., Zheng Y., Feng H., Qu H., Fan X., Yamaji N., Ma J.F., Xu G.
J. Exp. Bot. 2018  69(5)  1095-1107
OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.
Wang W., Hu B., Yuan D., Liu Y., Che R., Hu Y., Ou S., Liu Y., Zhang Z., Wang H., Li H., Jiang Z., Zhang Z., Gao X., Qiu Y., Meng X., Liu Y., Bai Y., Liang Y., Wang Y., Zhang L., Li L., Sodmergen, Jing H., Li J., Chu C.
Plant Cell 2018  30(3)  638-651
Expression of the Nitrate Transporter Gene <i>OsNRT1.1A/OsNPF6.3</i> Confers High Yield and Early Maturation in Rice.
Phule A.S., Barbadikar K.M., Madhav M.S., Senguttuvel P., Babu MBBP., Ananda Kumar P.
3 Biotech 2018  8(9)  383
Genes encoding membrane proteins showed stable expression in rice under aerobic condition: novel set of reference genes for expression studies.
Chen J., Fan X., Qian K., Zhang Y., Song M., Liu Y., Xu G., Fan X.
Plant Biotechnol. J. 2017   
pOsNAR2.1:OsNAR2.1 expression enhances nitrogen uptake efficiency and grain yield in transgenic rice plants.
Feng H., Li B., Zhi Y., Chen J., Li R., Xia X., Xu G., Fan X.
Plant Cell Rep. 2017  36(8)  1287-1296
Overexpression of the nitrate transporter, OsNRT2.3b, improves rice phosphorus uptake and translocation.
Fan X., Tang Z., Tan Y., Zhang Y., Luo B., Yang M., Lian X., Shen Q., Miller A.J., Xu G.
Proc. Natl. Acad. Sci. U.S.A. 2016  113(26)  7118-23
Overexpression of a pH-sensitive nitrate transporter in rice increases crop yields.
Zhu J., Liang J., Xu Z., Fan X., Zhou Q., Shen Q., Xu G.
AoB Plants 2015  7 
Root aeration improves growth and nitrogen accumulation in rice seedlings under low nitrogen.
Yan Y., Wang H., Hamera S., Chen X., Fang R.
Plant J. 2014  78(1)  44-55
miR444a has multiple functions in the rice nitrate-signaling pathway.
Liu X., Huang D., Tao J., Anthony J Miller, Fan X., Xu G.
New Phytol. 2014  204(1)  74-80
Identification and functional assay of the interaction motifs in the partner protein OsNAR2.1 of the two-component system for high-affinity nitrate transport.
Yang B.a, Wang X.M.a, Ma H.Y.a, Jia Y.a, Li X.b, Dai C.C.a
Plant Growth Regul. 2014  73  165-179
Effects of the fungal endophyte Phomopsis liquidambari on nitrogen uptake and metabolism in rice
Tang Z., Fan X., Li Q., Feng H., Miller A.J., Shen Q., Xu G.
Plant Physiol. 2012  160(4)  2052-63
Knockdown of a rice stelar nitrate transporter alters long-distance translocation but not root influx.
Wang H., Wu Z., Han J., Zheng W., Yang C.
PLoS ONE 2012  7(5)  e37817
Comparison of ion balance and nitrogen metabolism in old and young leaves of alkali-stressed rice plants.
Wang H., Ahan J., Wu Z., Shi D., Liu B., Yang C.
Plant Soil 2012  355  131-147
Alteration of nitrogen metabolism in rice variety 'Nipponbare' induced by alkali stress
Takayanagi S,Takagi Y,Araki R,Hasegawa H
J. Plant Res. 2011  124  305-9
High-affinity nitrate uptake by rice (Oryza sativa) coleoptiles.
Feng H., Fan X., Yan M., Liu X., Miller A.J., Xu G.
Plant Signal Behav 2011  6(9)  1286-9
Multiple roles of nitrate transport accessory protein NAR2 in plants.
Yan M., Fan X., Feng H., Miller A.J., Shen Q., Xu G.
Plant Cell Environ. 2011  34(8)  1360-72
Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges.
Feng H. , Yan M. , Fan X. , Li B. , Shen Q. , Miller A.J. , Xu G.
J. Exp. Bot. 2011  62(7)  2319-32
Spatial expression and regulation of rice high-affinity nitrate transporters by nitrogen and carbon status.
Plett D., Toubia J., Garnett T., Tester M., Brent N Kaiser, Baumann U.
PLoS ONE 2010  5(12)  e15289
Dichotomy in the NRT gene families of dicots and grass species.
Araki R, Hasegawa H.
Breeding Science 2006  56(3)  295-302
Expression of Rice (Oryza sativa L.) Genes Involved in High-Affinity Nitrate Transport during the Period of Nitrate Induction
TextPresso Search Search textpresso for HTNE ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology aerenchyma formation( GO:0010618 )
response to heat( GO:0009408 )
heat acclimation( GO:0010286 )
regulation of photorespiration( GO:0080093 )
phosphate transport( GO:0006817 )
iron ion transport( GO:0006826 )
phloem transport( GO:0010233 )
response to auxin stimulus( GO:0009733 )
transmembrane transport( GO:0055085 )
response to water deprivation( GO:0009414 )
response to copper ion( GO:0046688 )
signal transduction( GO:0007165 )
response to flooding( GO:0009413 )
nitrate transmembrane transporter activity( GO:0015112 )
response to fungus( GO:0009620 )
response to symbiotic fungus( GO:0009610 )
nitrogen utilization( GO:0019740 )
response to pH( GO:0009268 )
integral to membrane( GO:0016021 )
plasma membrane( GO:0005886 )
regulation of pH( GO:0006885 )
response to oxygen levels( GO:0070482 )
Trait Ontology yield trait( TO:0000371 )
seed number( TO:0000445 )
spikelet fertility( TO:0000180 )
phosphorus uptake( TO:0000511 )
drought tolerance( TO:0000276 )
oxygen sensitivity( TO:0000015 )
panicle size( TO:0006032 )
primary branch number( TO:0000547 )
secondary branch number( TO:0000557 )
grain yield( TO:0000396 )
giant embryo( TO:0000113 )
copper sensitivity( TO:0000021 )
auxin sensitivity( TO:0000163 )
heat tolerance( TO:0000259 )
total biomass yield( TO:0000457 )
growth and development trait( TO:0000357 )
Plant Ontology phloem( PO:0005417 )
root( PO:0009005 )
leaf( PO:0025034 )
shoot system( PO:0009006 )
xylem( PO:0005352 )
Related Strains
Phenotype images
Last updated
Jun 28, 2023