Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol NRAMP1
Gene Symbol Synonym OsNramp1, OsNRAMP1, OsNramp6
CGSNL Gene Name BACTERIOCIDE EFFECT 1
Gene Name Synonym homologues of mammalian Nramp1 gene, Natural resistance-associated macrophage protein 1
Protein Name
Allele osnramp1
Chromosome No. 7
Explanation L41217, S81897. D15268. integral membrane protein. Q0D7E4. TO:0006059: cadmium concentration. TO:0006059: cadmium content trait. TO:1000056: shoot system cadmium content. TO:1000030: root system cadmium content. TO:1000039: root system manganese content. TO:1000064: shoot system manganese content. TO:0006049: iron concentration. TO:0020089: iron content trait. TO:0006053: zinc concentration. TO:0006054: arsenic concentration. OsNramp6 in Liang et al. 2014. arsenic transport. NRAMP transporter (Fe/Mn/Cd/As transport). GO:1990641: response to iron ion starvation. GO:0090551: response to manganese starvation.
Trait Class Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK121534
AK103557
MSU ID LOC_Os07g15460.1
LOC_Os07g15460.2
RAP ID Os07g0258400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Adhikari A., Aneefi A.G., Sisuvanh H., Singkham S., Pius M.V., Akter F., Kwon E.H., Kang S.M., Woo Y.J., Yun B.W., Lee I.J.
Int J Mol Sci 2023  24(24) 
Dynamics of Humic Acid, Silicon, and Biochar under Heavy Metal, Drought, and Salinity with Special Reference to Phytohormones, Antioxidants, and Melatonin Synthesis in Rice.
Syu C.H., Nieh T.I., Hsieh M.T., Lo Y.C., Du P.R., Lin Y.W., Wu D.H.
Plants (Basel) 2022  11(21) 
Uncovering the Genetic of Cadmium Accumulation in the Rice 3K Panel.
Regon P., Dey S., Rehman M., Pradhan A.K., Chowra U., Tanti B., Talukdar A.D., Panda S.K.
Front Plant Sci 2022  13  798580
Transcriptomic Analysis Revealed Reactive Oxygen Species Scavenging Mechanisms Associated With Ferrous Iron Toxicity in Aromatic Keteki Joha Rice.
Zhang J., Zhu Y., Yu L., Yang M., Zou X., Yin C., Lin Y.
Cells 2022  11(3) 
Research Advances in Cadmium Uptake, Transport and Resistance in Rice (<i>Oryza sativa</i> L.).
Xue W., Wang P., Tang L., Zhang C., Wang C., Huang Y., Zhang X., Li Y., Zhao B., Liu Z.
Ecotoxicol. Environ. Saf. 2021  211  111921
Citric acid inhibits Cd uptake by improving the preferential transport of Mn and triggering the defense response of amino acids in grains.
Cao L., Gao Y., Yu J., Niu S., Zeng J., Yao Q., Wang X., Bu Z., Xu T., Liu X., Zhu Y.
Plant Physiol. Biochem. 2021  158  275-283
Streptomyces hygroscopicus OsiSh-2-induced mitigation of Fe deficiency in rice plants.
Liang G., Zhang H., Li Y., Pu M., Yang Y., Li C., Lu C., Xu P., Yu D.
J Integr Plant Biol 2020  62(5)  668-689
Oryza sativa FER-LIKE FE DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (OsFIT/OsbHLH156) interacts with OsIRO2 to regulate iron homeostasis.
Chang J.D., Huang S., Yamaji N., Zhang W., Ma J.F., Zhao F.J.
Plant Cell Environ. 2020  43(10)  2476-2491
OsNRAMP1 transporter contributes to cadmium and manganese uptake in rice.
Cao Z.Z., Lin X.Y., Yang Y.J., Guan M.Y., Xu P., Chen M.X.
BMC Plant Biol. 2019  19(1)  250
Gene identification and transcriptome analysis of low cadmium accumulation rice mutant (lcd1) in response to cadmium stress using MutMap and RNA-seq.
Sánchez-Sanuy F., Peris-Peris C., Tomiyama S., Okada K., Hsing Y.I., San Segundo B., Campo S.
BMC Plant Biol. 2019  19(1)  563
Osa-miR7695 enhances transcriptional priming in defense responses against the rice blast fungus.
Chen X., Ouyang Y., Fan Y., Qiu B., Zhang G., Zeng F.
J. Exp. Bot. 2018  69(21)  5279-5291
The pathway of transmembrane cadmium influx via calcium-permeable channels and its spatial characteristics along rice root.
Shi X., Chen S., Peng Y., Wang Y., Chen J., Hu Z., Wang B., Li A., Chao D., Li Y., Teng S.
J Integr Plant Biol 2018  60(2)  112-129
TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.
Tanaka N., Uraguchi S., Kajikawa M., Saito A., Ohmori Y., Fujiwara T.
Plant J. 2018  96(5)  997-1006
A rice PHD-finger protein OsTITANIA, is a growth regulator that functions through elevating expression of transporter genes for multiple metals.
Mani A., Sankaranarayanan K.
Protein J. 2018  37(3)  237-247
In Silico Analysis of Natural Resistance-Associated Macrophage Protein (NRAMP) Family of Transporters in Rice.
Chen Y., Han Y.H., Cao Y., Zhu Y.G., Rathinasabapathi B., Ma L.Q.
Front Plant Sci 2017  8  268
Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice.
Bashir K., Ishimaru Y., Itai R.N., Senoura T., Takahashi M., An G., Oikawa T., Ueda M., Sato A., Uozumi N., Nakanishi H., Nishizawa N.K.
Plant Mol. Biol. 2015  88(1-2)  165-76
Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.
Tiwari M., Sharma D., Dwivedi S., Singh M., Tripathi R.D., Trivedi P.K.
Plant Cell Environ. 2014  37(1)  140-52
Expression in Arabidopsis and cellular localization reveal involvement of rice NRAMP, OsNRAMP1, in arsenic transport and tolerance.
Agarwal S., Tripura Venkata VG., Kotla A., Mangrauthia S.K., Neelamraju S.
Gene 2014  546(2)  430-6
Expression patterns of QTL based and other candidate genes in Madhukar × Swarna RILs with contrasting levels of iron and zinc in unpolished rice grains.
Kobayashi T.a b, Nakanishi Itai R.c, Nishizawa N.K.b
Rice 2014  7 
Iron deficiency responses in rice roots
Liang C., Wang Y., Zhu Y., Tang J., Hu B., Liu L., Ou S., Wu H., Sun X., Chu J., Chu C.
Proc. Natl. Acad. Sci. U.S.A. 2014  111(27)  10013-8
OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice.
Takahashi R., Ishimaru Y., Shimo H., Bashir K., Senoura T., Sugimoto K., Ono K., Suzui N., Kawachi N., Ishii S., Yin Y.G., Fujimaki S., Yano M., Nishizawa N.K., Nakanishi H.
PLoS ONE 2014  9(6)  e98816
From laboratory to field: OsNRAMP5-knockdown rice is a promising candidate for Cd phytoremediation in paddy fields.
Jan A., Maruyama K., Todaka D., Kidokoro S., Abo M., Yoshimura E., Shinozaki K., Nakashima K., Kazuko Yamaguchi-Shinozaki
Plant Physiol. 2013  161(3)  1202-16
OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes.
Anuradha K., Agarwal S., Rao Y.V., Rao K.V., Viraktamath B.C., Sarla N.
Gene 2012  508(2)  233-40
Mapping QTLs and candidate genes for iron and zinc concentrations in unpolished rice of Madhukar×Swarna RILs.
Wang L., Ying Y., Narsai R., Ye L., Zheng L., Tian J., Whelan J., Shou H.
Plant Cell Environ. 2012  36(1)  224-36.
Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa.
Ishikawa S., Ishimaru Y., Igura M., Kuramata M., Abe T., Senoura T., Hase Y., Arao T., Nishizawa N.K., Nakanishi H.
Proc. Natl. Acad. Sci. U.S.A. 2012  109(47)  19166-71
Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice.
Takahashi R. , Ishimaru Y. , Senoura T. , Shimo H. , Ishikawa S. , Arao T. , Nakanishi H. , Nishizawa N.K.
J. Exp. Bot. 2011    -
The OsNRAMP1 iron transporter is involved in Cd accumulation in rice.
Takanashi H., Ishimaru Y., Bashir K., Fujimoto M., Shimo H., An G., Nagasaka S., Nishizawa N.K., Nakanishi H., Tsutsumi N.
Nature Communications 2011  2  322
The rice mitochondrial iron transporter is essential for plant growth
Takahashi R., Ishimaru Y., Nakanishi H., Nishizawa N.K.
Plant Signal Behav 2011  6(11) 
Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice.
Ishimaru Y., Masuda H., Bashir K., Inoue H., Tsukamoto T., Takahashi M., Nakanishi H., Aoki N., Hirose T., Ohsugi R., Naoko K Nishizawa
Plant J. 2010  62(3)  379-90
Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese.
Narayanan NN, Vasconcelos MW, Grusak MA.
Plant Physiol. Biochem. 2007  45(5)  277-86.
Expression profiling of Oryza sativa metal homeostasis genes in different rice cultivars using a cDNA macroarray.
C Curie, J M Alonso, M Le Jean, J R Ecker, J F Briat
Biochem. J. 2000  347 Pt 3  749-55
Involvement of NRAMP1 from Arabidopsis thaliana in iron transport.
Belouchi,A., Kwan,T. and Gros,P.
Plant Mol. Biol. 1997  33(6)  1085-1092
Cloning and characterization of the OsNramp family from Oryza sativa, a new family of membrane proteins possibly implicated in the transport of metal ions.
Belouchi,A., Cellier,M., Kwan,T., Saini,H.S., Leroux,G. and Gros,P.
Plant Mol. Biol. 1995  29(6)  1181-1196
The macrophage-specific membrane protein Nramp controlling natural resistance to infections in mice has homologues expressed in the root system of plants.
TextPresso Search Search textpresso for NRAMP1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to metal ion( GO:0010038 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
response to iron(II) ion( GO:0010040 )
plasma membrane( GO:0005886 )
manganese ion homeostasis( GO:0055071 )
cadmium ion homeostasis( GO:0055073 )
manganese ion transport( GO:0006828 )
response to symbiotic bacterium( GO:0009609 )
response to iron ion( GO:0010039 )
iron ion transmembrane transporter activity( GO:0005381 )
cadmium ion transport( GO:0015691 )
integral to membrane( GO:0016021 )
metal ion transport( GO:0030001 )
iron ion homeostasis( GO:0055072 )
response to arsenic( GO:0046685 )
response to cadmium ion( GO:0046686 )
Trait Ontology iron sensitivity( TO:0000224 )
salt tolerance( TO:0006001 )
drought tolerance( TO:0000276 )
Plant Ontology endodermis( PO:0000252 )
pericycle( PO:0006203 )
root( PO:0009005 )
leaf( PO:0025034 )
leaf mesophyll( PO:0005645 )
leaf sheath( PO:0020104 )
stem node( PO:0020141 )
parenchyma( PO:0005421 )
Related Strains
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Phenotype images
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Last updated
Jun 10, 2024

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