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Basic Information
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CGSNL Gene Symbol
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XA1
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Gene Symbol Synonym
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Xa1(Xe), Xe, Xa1, Xa-1
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CGSNL Gene Name
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XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 1
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Gene Name Synonym
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Xanthomonas oryzae pv. oryzae resistance 1, Xanthomonas campestris pv. oryzae resistance-1, Xanthomonas oryzae pv. oryzae resistance-1
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Protein Name
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Allele
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Xa1-h, xa1
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Chromosome No.
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4
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Explanation
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Resistant to the Japanese Isolate Group I. [368]. AB002266. PO:0009025; leaf. Xa1 is a member of the NBS-LRR class of plant diseaseresistance genes (Yoshimura et al. 1998).
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Trait Class
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Tolerance and resistance - Disease resistance
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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LOC_Os04g53120.1
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RAP ID
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Os04g0622600
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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68.0
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Link map
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Classical linkage map
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References
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Yoshihisa A., Yoshimura S., Shimizu M., Sato S., Matsuno S., Mine A., Yamaguchi K., Kawasaki T.
New Phytol. 2022 236(4) 1441-1454
The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors.
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Xu X., Xu Z., Ma W., Haq F., Li Y., Shah S.M.A., Zhu B., Zhu C., Zou L., Chen G.
J. Exp. Bot. 2021 72(8) 3249-3262
TALE-triggered and iTALE-suppressed Xa1-mediated resistance to bacterial blight is independent of rice transcription factor subunits OsTFIIAgamma1 or OsTFIIAgamma5.
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Yu H., Shahid M.Q., Li R., Li W., Liu W., Ghouri F., Liu X.
Plant Molecular Biology Reporter 2018 36(4) 618-630
Genome-Wide Analysis of Genetic Variations and the Detection of Rich Variants of NBS-LRR Encoding Genes in Common Wild Rice Lines.
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Choi N.Y., Lee E., Lee S.G., Choi C.H., Park S.R., Ahn I., Bae S.C., Hwang C.H., Hwang D.J.
Front Plant Sci 2017 8 1628
Genome-Wide Expression Profiling of OsWRKY Superfamily Genes during Infection with Xanthomonas oryzae pv. oryzae Using Real-Time PCR.
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Nino-Liu, D.O., P.C. Ronald and A.J. Bogdanove
Mol. Plant Pathol. 2006 7(5) 303-324
Pathogen profile Xanthomonas oryzae pathovars: model pathogens of a model crop.
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Muralidharan, K., D. Krishnaveni, G.S. Laha, C.S. Reddy, M. Srinivasprasad and R. Sridhar
RGN 2003 20 96-98
Appraisal of bacterial leaf blight resistance genes in India.
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Kaku, H.
RGN 2000 17 78-80.
The additive effect of bacterial blight resistance genes Xa1 and Xa4 in rice.
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Yoshimura,S., Yamanouchi,U., Katayose,Y., Toki,S., Wang,Z.X., Kono,I., Kurata,N., Yano,M., Iwata,N. and Sasaki,T.
Proc. Natl. Acad. Sci. U.S.A. 1998 95(4) 1663-1668
Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation.
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Kaku, H.
RGN 1997 14 64-67.
The dosage effect of bacterial blight resistance genes Xa1 and Xa3 in rice.
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Ronald, P.C.
Plant Mol. Biol. 1997 35 179-186.
The molecular basis of disease resistance in rice.
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Yoshimura, S., Y. Umehara, N. Kurata, Y. Nagamura, T. Sasaki, Y. Minobe and N. Iwata
Theor. Appl. Genet. 1996 93 117-122.
Identification of a YAC clone carrying the Xa-1 allele, a bacterial blight resistance gene in rice.
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Yoshimura, S., A. Yoshimura, R.J. Nelson, T.W. Mew and N. Iwata
Breeding Science 1995 45 81-85.
Tagging Xa-1, the bacterical blight resistance gene in rice, by using RAPD markers.
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Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994 138 1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
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Yoshimura, S., N. Kurata, T. Sasaki and A. Yoshimura
Recent Advances in Breeding 1994 36 33-36.
Genetic analysis of bacterial blight resistance genes in rice by using molecular markers.
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Yoshimura, S., A. Yoshimura, A. Saito, N. Kishimoto, M. Kawase, M. Yano, M. Nakagahra, T. Ogawa and N. Iwata
Jpn. J. Genet. 1992 67 29-37.
RFLP analysis of introgressed chromosomal segments in three near-isogenic lines of rice for bacterial blight resistance genes, Xa-1, Xa-3 and Xa-4.
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Yoshimura, S., A. Yoshimura and N. Iwata
Japan. J. Breed. 1992 42(Suppl. 2) 204-205.
Tagging Xa-1, the bacterial blight resistance gene in rice, by using RAPD markers.
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Yamada, T. and O. Horino
Japan. J. Breed. 1981 31(4) 423-431.
Studies on genetics and breeding of resistance to bacterial leaf blight in rice. V. The multiple alleles resistant to the bacterial groups I and V of X. campestris pv. oryzae of Japan in the varieties IR28, IR29 and IR30.
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Petpisit, V., G.S. Khush and H.E. Kauffman
Crop Sci. 1977 17(4) 551-554.
Inheritance of resistance to bacterial blight in rice.
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Sakaguchi, S.
Bull. Natl. Inst. Agric. Sci., Ser.D 1967 16 1-18.
Linkage studies on the resistance to bacterial leaf blight, Xanthomonas oryzae (Uyeda et Ishiyama) Dowson, in rice.
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TextPresso Search
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Search textpresso for XA1
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0061011
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Ontologies
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Gene Ontology
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detection of molecule of bacterial origin( GO:0032490 )
response to molecule of bacterial origin( GO:0002237 )
defense response to bacterium( GO:0042742 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
ATP binding( GO:0005524 )
apoptosis( GO:0006915 )
defense response( GO:0006952 )
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Trait Ontology
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bacterial blight disease resistance( TO:0000175 )
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Plant Ontology
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vascular leaf( PO:0009025 )
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Related Strains
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Stocks for Genes
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1
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Phenotype images
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-
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Last updated
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Mar 10, 2023
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