Update info.Gene - Detail
Detail of Gene
Click here for feedback| Basic Information | |
|---|---|
| CGSNL Gene Symbol | SGD2 |
| Gene Symbol Synonym | HOX3, Oshox3, OsHox3, OsHDZ1, HDZ1, OsHDZIP1, HDZIP1 |
| CGSNL Gene Name | SMALL GRAIN AND DWARF 2 |
| Gene Name Synonym | rice homeobox gene 3, Homeobox-leucine zipper protein HOX3, Homeodomain transcription factor HOX3, HD-ZIP protein HOX3, Small Grain and Dwarf 2, homeodomain-leucine zipper transcription factor 1, OsHDZIP transcription factor 1 |
| Protein Name | HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX3 |
| Allele | sgd2 |
| Chromosome No. | 1 |
| Explanation | Q9XH38(indica), Q0JKX1(japonica). PO:0030123: panicle inflorescence. TO:0000975: grain width. GO:0080186: developmental vegetative growth. GO:0061458: reproductive system development. |
| Trait Class |
Vegetative organ - Leaf
Vegetative organ - Culm Reproductive organ - panicle Seed - Morphological traits - Grain shape Tolerance and resistance - Stress tolerance Character as QTL - Yield and productivity Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AF145727
|
| MSU ID |
LOC_Os01g45570.1
|
| RAP ID |
Os01g0643600 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
Link to INSD Accession List |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
|
Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022 9(8) The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
|
|
|
Chen W., Cheng Z., Liu L., Wang M., You X., Wang J., Zhang F., Zhou C., Zhang Z., Zhang H., You S., Wang Y., Luo S., Zhang J., Wang J., Wang J., Zhao Z., Guo X., Lei C., Zhang X., Lin Q., Ren Y., Zhu S., Wan J.
Plant Sci. 2019 288 110208 Small Grain and Dwarf 2, encoding an HD-Zip II family transcription factor, regulates plant development by modulating gibberellin biosynthesis in rice.
|
|
|
Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008 66(1-2) 87-103 A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
|
|
|
Meijer,A.H., R.J., d'Erfurth,I., Shen,W. and Hoge,J.H.
Mol. Gen. Genet. 2000 263(1) 12-21 HD-Zip proteins of families I and II from rice: interactions and functional properties.
|
|
| TextPresso Search | Search textpresso for SGD2 ( Recent references may be retrievable, but without any warranty ) |
| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
response to salt stress( GO:0009651 )
DNA binding( GO:0003677 ) transcription factor activity( GO:0003700 ) nucleus( GO:0005634 ) regulation of transcription, DNA-dependent( GO:0006355 ) sequence-specific DNA binding( GO:0043565 ) cell growth( GO:0016049 ) translation repressor activity( GO:0030371 ) positive regulation of gibberellin biosynthetic process( GO:0010372 ) transcription( GO:0006350 ) |
| Trait Ontology |
gibberellic acid content( TO:0002675 )
leaf sheath length( TO:0002689 ) plant height( TO:0000207 ) leaf number( TO:0000241 ) panicle length( TO:0000040 ) internode length( TO:0000145 ) grain size( TO:0000397 ) 1000-dehulled grain weight( TO:0000592 ) tiller number( TO:0000346 ) primary branch number( TO:0000547 ) seed set percent( TO:0000455 ) grain length( TO:0000734 ) shoot apical meristem development( TO:0006020 ) salt tolerance( TO:0006001 ) |
| Plant Ontology |
root( PO:0009005 )
stem node( PO:0020141 ) floral organ( PO:0025395 ) leaf( PO:0025034 ) inflorescence( PO:0009049 ) endosperm( PO:0009089 ) |
| Related Strains | |
| - | |
| Phenotype images | |
| - | |
| Last updated | |
| Dec 16, 2022 | |
