Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SGD2
Gene Symbol Synonym HOX3, Oshox3, OsHox3, OsHDZ1, HDZ1, OsHDZIP1, HDZIP1
Gene Name Synonym rice homeobox gene 3, Homeobox-leucine zipper protein HOX3, Homeodomain transcription factor HOX3, HD-ZIP protein HOX3, Small Grain and Dwarf 2, homeodomain-leucine zipper transcription factor 1, OsHDZIP transcription factor 1
Allele sgd2
Chromosome No. 1
Explanation Q9XH38(indica), Q0JKX1(japonica). PO:0030123: panicle inflorescence. TO:0000975: grain width. GO:0080186: developmental vegetative growth. GO:0061458: reproductive system development.
Trait Class Vegetative organ - Leaf
Vegetative organ - Culm
Reproductive organ - panicle
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
cDNA Accession No. AF145727
MSU ID LOC_Os01g45570.1
RAP ID Os01g0643600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022  9(8) 
The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
Chen W., Cheng Z., Liu L., Wang M., You X., Wang J., Zhang F., Zhou C., Zhang Z., Zhang H., You S., Wang Y., Luo S., Zhang J., Wang J., Wang J., Zhao Z., Guo X., Lei C., Zhang X., Lin Q., Ren Y., Zhu S., Wan J.
Plant Sci. 2019  288  110208
Small Grain and Dwarf 2, encoding an HD-Zip II family transcription factor, regulates plant development by modulating gibberellin biosynthesis in rice.
Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008  66(1-2)  87-103
A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
Meijer,A.H., R.J., d'Erfurth,I., Shen,W. and Hoge,J.H.
Mol. Gen. Genet. 2000  263(1)  12-21
HD-Zip proteins of families I and II from rice: interactions and functional properties.
TextPresso Search Search textpresso for SGD2 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to salt stress( GO:0009651 )
DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
cell growth( GO:0016049 )
translation repressor activity( GO:0030371 )
positive regulation of gibberellin biosynthetic process( GO:0010372 )
transcription( GO:0006350 )
Trait Ontology gibberellic acid content( TO:0002675 )
leaf sheath length( TO:0002689 )
plant height( TO:0000207 )
leaf number( TO:0000241 )
panicle length( TO:0000040 )
internode length( TO:0000145 )
grain size( TO:0000397 )
1000-dehulled grain weight( TO:0000592 )
tiller number( TO:0000346 )
primary branch number( TO:0000547 )
seed set percent( TO:0000455 )
grain length( TO:0000734 )
shoot apical meristem development( TO:0006020 )
salt tolerance( TO:0006001 )
Plant Ontology root( PO:0009005 )
stem node( PO:0020141 )
floral organ( PO:0025395 )
leaf( PO:0025034 )
inflorescence( PO:0009049 )
endosperm( PO:0009089 )
Related Strains
Phenotype images
Last updated
Dec 16, 2022