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Basic Information
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CGSNL Gene Symbol
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EBP-89
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Gene Symbol Synonym
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OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89, EBP89, DLN76, OsDLN76
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CGSNL Gene Name
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EREBP TRANSCRIPTION FACTOR
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Gene Name Synonym
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EREBP transcription factor, ethylene response factor 60, APETALA2/ethylene-responsive element binding protein 27, DLN repressor 76, DLN motif protein 76
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Protein Name
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EREBP TRANSCRIPTION FACTOR
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Allele
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ebp89.1, ebp89.2, osebp89-1, osebp89-2
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Chromosome No.
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3
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Explanation
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AJ312199. GO:0098869: cellular oxidant detoxification. GO:2000377: regulation of reactive oxygen species metabolic process.
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Trait Class
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Seed - Physiological traits - Storage substances
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK073133
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MSU ID
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LOC_Os03g08460.1
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RAP ID
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Os03g0182800
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Hu Z., Liu H., Guo M., Han X., Li Y., Chen R., Guo Y., Yang Y., Sun S., Zhou Y., Gu M., Yan C.
Nat Commun 2025 16(1) 6653
Natural variation of an E3 ubiquitin ligase encoding gene Chalk9 regulates grain chalkiness in rice.
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Xue F., Ning L., Qiang Z., Fu X., Qu C.
Foods 2025 14(16)
Transcriptome Analysis Reveals Quality Improvement Mechanisms in Ratoon Rice.
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Tu B., Zhang T., Liu P., Yang W., Zheng L., Dai Y., Wang H., Lin S., Zhang Z., Zheng X., Yuan M., Chen Y., Zhu X., Yuan H., Li T., Xiong J., Zhong Z., Chen W., Ma B., Qin P., Wang Y., Li S.
Plant Biotechnol. J. 2024
The LCG1-OsBP5/OsEBP89-Wx module regulates the grain chalkiness and taste quality in rice.
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Hu Z., Niu F., Yan P., Wang K., Zhang L., Yan Y., Zhu Y., Dong S., Ma F., Lan D., Liu S., Xin X., Wang Y., Yang J., Cao L., Wu S., Luo X.
J Integr Plant Biol 2023 65(7) 1782-1793
The kinase OsSK41/OsGSK5 negatively regulates amylose content in rice endosperm by affecting the interaction between OsEBP89 and OsBP5.
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Liu X.H., Lyu Y.S., Yang W., Yang Z.T., Lu S.J., Liu J.X.
Plant Biotechnol. J. 2020 18(5) 1317-1329
A membrane-associated NAC transcription factor OsNTL3 is involved in thermotolerance in rice.
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Zhang Y., Li J., Chen S., Ma X., Wei H., Chen C., Gao N., Zou Y., Kong D., Li T., Liu Z., Yu S., Luo L.
Mol. Genet. Genomics 2020 295(4) 941-956
An APETALA2/ethylene responsive factor, OsEBP89 knockout enhances adaptation to direct-seeding on wet land and tolerance to drought stress in rice.
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Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019 20(7)
Analysis of Rice Proteins with DLN repressor Motif/S.
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Yang C., Lu X., Ma B., Chen S.Y., Zhang J.S.
Mol Plant 2015 8(4) 495-505
Ethylene Signaling in Rice and Arabidopsis: Conserved and Diverged Aspects.
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Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.
Evol. Bioinform. Online 2012 8 321-355
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
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Im CH,Hwang SM,Son YS,Heo JB,Bang WY,Swasticka IN,Shiina T,Bahk JD
J. Biol. Chem. 2011 286(10) 8620-32
Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function in pre-60S ribosomal subunit maturation of mono- and di-cotyledonous plants.
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Jung KH,Seo YS,Walia H,Cao P,Fukao T,Canlas PE,Amonpant F,Bailey-Serres J,Ronald PC
Plant Physiol. 2010 152 1674-92
The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors.
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Nakano T, Suzuki K, Fujimura T, Shinshi H.
Plant Physiol. 2006 140(2) 411-32
Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
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Zhu,Y., Cai,X.L., Wang,Z.Y. and Hong,M.M.
J. Biol. Chem. 2003 278(48) 47803-47811
An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene.
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Yang,H.J., Shen,H., Chen,L., Xing,Y.Y., Wang,Z.Y., Zhang,J.L. and Hong,M.M.
Plant Mol. Biol. 2002 50(3) 379-391
The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem.
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DB Reference
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Gramene ID
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GR:0061379
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Ontologies
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Gene Ontology
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transcription factor activity( GO:0003700 )
transcription, DNA-dependent( GO:0006351 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
response to auxin stimulus( GO:0009733 )
response to salt stress( GO:0009651 )
response to ethylene stimulus( GO:0009723 )
regulation of polysaccharide biosynthetic process( GO:0032885 )
endosperm development( GO:0009960 )
response to deep water( GO:0030912 )
response to water deprivation( GO:0009414 )
response to oxidative stress( GO:0006979 )
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Trait Ontology
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salt tolerance( TO:0006001 )
ethylene sensitivity( TO:0000173 )
auxin sensitivity( TO:0000163 )
amylose content( TO:0000196 )
fruit flavor trait( TO:0002694 )
chalky endosperm( TO:0000266 )
endosperm storage protein content( TO:0002653 )
oxidative stress( TO:0002657 )
drought tolerance( TO:0000276 )
submergence tolerance( TO:0000524 )
proline content( TO:0006002 )
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Plant Ontology
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seed development stage( PO:0001170 )
endosperm development stage( PO:0007633 )
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Related Strains
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Phenotype images
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Last updated
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Jan 12, 2026
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Update info.