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Detail of Gene

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Basic Information
CGSNL Gene Symbol ARF1
Gene Symbol Synonym OsARF1, arf1, OsARF23, ARF23
Gene Name Synonym auxin response factor-1, auxin response factor 1, auxin response factor-23, auxin response factor 23
Allele osarf1, osarf23
Chromosome No. 11
Explanation AJ306306. putative transcription factor. A2ZET6(indica), Q2R3F5 (japonica). AK071997. PO:0000003; whole plant. OsARF23 in Li et al. 2014, Gan et al. 2015, Shafiq et al. 2017, Guo et al. 2019, Li et al. 2021, Guo et al. 2023, Chen et al. 2019. Auxin response factor 2 in Castano-Duque et al. 2021. GO:1990110: callus formation.
Trait Class Other
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK065936
MSU ID LOC_Os11g32110.1
RAP ID Os11g0523800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023  6(1)  457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
Li M., Fu D., Xu T., Wu C.
Int J Mol Sci 2021  22(15) 
<i>VPB1</i> Encoding BELL-like homeodomain Protein Is Involved in Rice Panicle Architecture.
Xia T., Chen H., Dong S., Ma Z., Ren H., Zhu X., Fang X., Chen F.
Plant J. 2020  104(6)  1635-1647
OsWUS promotes tiller bud growth by establishing weak apical dominance in rice.
Guo T., Chen K., Dong N.Q., Ye W.W., Shan J.X., Lin H.X.
J Integr Plant Biol 2019   
Tillering and small grain 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.
Lee H.Y., Chen Z., Zhang C., Yoon G.M.
J. Exp. Bot. 2019  70(6)  1927-1940
Editing of the OsACS locus alters phosphate deficiency-induced adaptive responses in rice seedlings.
Chen K., Guo T., Li X.M., Zhang Y.M., Yang Y.B., Ye W.W., Dong N.Q., Shi C.L., Kan Y., Xiang Y.H., Zhang H., Li Y.C., Gao J.P., Huang X., Zhao Q., Han B., Shan J.X., Lin H.X.
Mol Plant 2019  12(8)  1123-1142
Translational Regulation of Plant Response to High Temperature by a Dual-Function tRNAHis guanylyltransferase in Rice.
Shafiq S., Chen C., Yang J., Cheng L., Ma F., Widemann E., Sun Q.
Mol Plant 2017   
DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.
Gan L., Wu H., Wu D., Zhang Z., Guo Z., Yang N., Xia K., Zhou X., Oh K., Matsuoka M., Ng D., Zhu C.
Plant Sci. 2015  241  238-45
Methyl jasmonate inhibits lamina joint inclination by repressing brassinosteroid biosynthesis and signaling in rice.
Aya K., Hobo T., Sato-Izawa K., Ueguchi-Tanaka M., Kitano H., Matsuoka M.
Plant Cell Physiol. 2014  55(5)  897-912
A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway.
Li G., Liang W., Zhang X., Ren H., Hu J., Bennett M.J., Zhang D.
Proc. Natl. Acad. Sci. U.S.A. 2014  111(28)  10377-82
Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y
J. Exp. Bot. 2010  61(14)  3971-81
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
Kotb A Attia, Amr F Abdelkhalik, Megahed H Ammar, Wei C., Yang J., David A Lightfoot, Wagih M El-Sayed, Hany A El-Shemy
Curr Issues Mol Biol 2009  11 Suppl 1  i29-34
Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice.
Song Y,You J,Xiong L
Plant Mol. Biol. 2009  70  297-309
Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis.
Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.
Gene 2007  394(1-2)  13-24
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
Nakamura A,Umemura I,Gomi K,Hasegawa Y,Kitano H,Sazuka T,Matsuoka M
Plant J. 2006  46  297-306
Production and characterization of auxin-insensitive rice by overexpression of a mutagenized rice IAA protein.
Ren H., Gu G., Long J., Yin Q., Wu T., Song T., Zhang S., Chen Z., Dong H.
J. Biosci. 2006  31(5)  617-27
Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance.
Ren H., Song T., Wu T., Sun L., Liu Y., Yang F., Chen Z., Dong H.
Ann. Microbiol. 2006  56  281-287
Effects of a biocontrol bacterium on growth and defence of transgenic rice plants expressing a bacterial type-III effector
Inukai,Y., Sakamoto,T., Ueguchi-Tanaka,M., Shibata,Y., Gomi,K., Umemura,I., Hasegawa,Y., Ashikari,M., Kitano,H. and Matsuoka,M.
Plant Cell 2005  17(5)  1387-1396
Crown rootless1, Which Is Essential for Crown Root Formation in Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin Signaling.
Waller,F., Furuya,M. and Nick,P.
Plant Mol. Biol. 2002  50(3)  415-425
OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene.
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DB Reference
Gramene ID -
Gene Ontology response to heat( GO:0009408 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
auxin mediated signaling pathway( GO:0009734 )
protein dimerization activity( GO:0046983 )
response to jasmonic acid stimulus( GO:0009753 )
response to starvation( GO:0042594 )
Trait Ontology plant growth hormone sensitivity( TO:0000401 )
jasmonic acid sensitivity( TO:0000172 )
callus induction( TO:0000428 )
heat tolerance( TO:0000259 )
Plant Ontology whole plant( PO:0000003 )
Related Strains
Phenotype images
Last updated
Oct 25, 2023