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Basic Information
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CGSNL Gene Symbol
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ARF1
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Gene Symbol Synonym
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OsARF1, arf1, OsARF23, ARF23
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CGSNL Gene Name
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AUXIN RESPONSE FACTOR 1
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Gene Name Synonym
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auxin response factor-1, auxin response factor 1, auxin response factor-23, auxin response factor 23
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Protein Name
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AUXIN RESPONSE FACTOR 1
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Allele
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osarf1, osarf23
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Chromosome No.
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11
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Explanation
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AJ306306. putative transcription factor. A2ZET6(indica), Q2R3F5 (japonica). AK071997. PO:0000003; whole plant. OsARF23 in Li et al. 2014, Gan et al. 2015, Shafiq et al. 2017, Guo et al. 2019.
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Trait Class
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Other
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK065936
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MSU ID
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LOC_Os11g32110.1
LOC_Os11g32110.2
LOC_Os11g32110.3
LOC_Os11g32110.4
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RAP ID
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Os11g0523800
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Guo T., Chen K., Dong N.Q., Ye W.W., Shan J.X., Lin H.X.
J Integr Plant Biol 2019
Tillering and small grain 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice.
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Lee H.Y., Chen Z., Zhang C., Yoon G.M.
J. Exp. Bot. 2019 70(6) 1927-1940
Editing of the OsACS locus alters phosphate deficiency-induced adaptive responses in rice seedlings.
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Shafiq S., Chen C., Yang J., Cheng L., Ma F., Widemann E., Sun Q.
Mol Plant 2017
DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.
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Gan L., Wu H., Wu D., Zhang Z., Guo Z., Yang N., Xia K., Zhou X., Oh K., Matsuoka M., Ng D., Zhu C.
Plant Sci. 2015 241 238-45
Methyl jasmonate inhibits lamina joint inclination by repressing brassinosteroid biosynthesis and signaling in rice.
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Li G., Liang W., Zhang X., Ren H., Hu J., Bennett M.J., Zhang D.
Proc. Natl. Acad. Sci. U.S.A. 2014 111(28) 10377-82
Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
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Aya K., Hobo T., Sato-Izawa K., Ueguchi-Tanaka M., Kitano H., Matsuoka M.
Plant Cell Physiol. 2014 55(5) 897-912
A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway.
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Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y
J. Exp. Bot. 2010 61(14) 3971-81
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
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Kotb A Attia, Amr F Abdelkhalik, Megahed H Ammar, Wei C., Yang J., David A Lightfoot, Wagih M El-Sayed, Hany A El-Shemy
Curr Issues Mol Biol 2009 11 Suppl 1 i29-34
Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice.
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Song Y,You J,Xiong L
Plant Mol. Biol. 2009 70 297-309
Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis.
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Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.
Gene 2007 394(1-2) 13-24
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
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Ren H., Song T., Wu T., Sun L., Liu Y., Yang F., Chen Z., Dong H.
Ann. Microbiol. 2006 56 281-287
Effects of a biocontrol bacterium on growth and defence of transgenic rice plants expressing a bacterial type-III effector
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Nakamura A,Umemura I,Gomi K,Hasegawa Y,Kitano H,Sazuka T,Matsuoka M
Plant J. 2006 46 297-306
Production and characterization of auxin-insensitive rice by overexpression of a mutagenized rice IAA protein.
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Ren H., Gu G., Long J., Yin Q., Wu T., Song T., Zhang S., Chen Z., Dong H.
J. Biosci. 2006 31(5) 617-27
Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance.
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Inukai,Y., Sakamoto,T., Ueguchi-Tanaka,M., Shibata,Y., Gomi,K., Umemura,I., Hasegawa,Y., Ashikari,M., Kitano,H. and Matsuoka,M.
Plant Cell 2005 17(5) 1387-1396
Crown rootless1, Which Is Essential for Crown Root Formation in Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin Signaling.
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Waller,F., Furuya,M. and Nick,P.
Plant Mol. Biol. 2002 50(3) 415-425
OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene.
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TextPresso Search
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Search textpresso for ARF1
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
auxin mediated signaling pathway( GO:0009734 )
protein dimerization activity( GO:0046983 )
response to jasmonic acid stimulus( GO:0009753 )
response to starvation( GO:0042594 )
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Trait Ontology
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plant growth hormone sensitivity( TO:0000401 )
jasmonic acid sensitivity( TO:0000172 )
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Plant Ontology
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whole plant( PO:0000003 )
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Related Strains
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Phenotype images
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Last updated
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Feb 24, 2020
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