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Detail of Gene

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Basic Information
CGSNL Gene Symbol XA13
Gene Symbol Synonym xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3, OsSWEET11a, SWEET11a
Gene Name Synonym Xanthomonas oryzae pv. oryzae resistance 13, Xanthomonas campestris pv. oryzae resistance-13, Xanthomonas oryzae pv. oryzae resistance-13
Allele ossweet11, ossweet11-2, ossweet11a-1, ossweet11a-2, osweet11a-3, osweet11a-4
Chromosome No. 8
Explanation Q6YZF3. DQ421394, DQ421395, DQ421396. Recessive resistant gene to Philippine isolate 6 but susceptible to isolates 1, 2, 3, 4, and 5. [RGN5:5]. a member of the NODULIN3 (N3) gene family. host disease-susceptibility gene for bacterial blight. MtN3 gene family. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. TO:0020101: starch mobilization. GO:1904982: sucrose transmembrane transport. TO:1000022: anther morphology trait.
Trait Class Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Seed - Morphological traits - Endosperm
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK070510
MSU ID LOC_Os08g42350.1
RAP ID Os08g0535200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Wu L.B., Eom J.S., Isoda R., Li C., Char S.N., Luo D., Schepler-Luu V., Nakamura M., Yang B., Frommer W.B.
New Phytol. 2022  234(3)  975-989
OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility.
Tonosaki K., Ono A., Kunisada M., Nishino M., Nagata H., Sakamoto S., Kijima S.T., Furuumi H., Nonomura K.I., Sato Y., Ohme-Takagi M., Endo M., Comai L., Hatakeyama K., Kawakatsu T., Kinoshita T.
Plant Cell 2021  33(1)  85-103
Mutation of the imprinted gene OsEMF2a induces autonomous endosperm development and delayed cellularization in rice.
Li P., Zhang L., Mo X., Ji H., Bian H., Hu Y., Majid T., Long J., Pang H., Tao Y., Ma J., Dong H.
J. Exp. Bot. 2019  70(12)  3057-3073
Rice aquaporin PIP1;3 and harpin Hpa1 of bacterial blight pathogen cooperate in a type III effector translocation.
Zhang L., Chen L., Dong H.
Front Plant Sci 2019  10  632
Plant Aquaporins in Infection by and Immunity Against Pathogens - A Critical Review.
Hui S., Shi Y., Tian J., Wang L., Li Y., Wang S., Yuan M.
Mol. Plant Pathol. 2019  20(4)  519-532
TALE-carrying bacterial pathogens trap host nuclear import receptors for facilitation of infection of rice.
Bian H., Zhang L., Chen L., Wang W., Ji H., Dong H.
J. Biosci. 2019  44(4) 
Real-time monitoring of translocation of selected type-III effectors from <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> into rice cells.
Ma W., Zou L., Zhiyuan J.I., Xiameng X.U., Zhengyin X.U., Yang Y., Alfano J.R., Chen G.
Mol. Plant Pathol. 2018  19(10)  2248-2262
Xanthomonas oryzae pv. oryzae TALE proteins recruit OsTFIIAgamma1 to compensate for the absence of OsTFIIAgamma5 in bacterial blight in rice.
Yang J., Luo D., Yang B., Frommer W.B., Eom J.S.
New Phytol. 2018  218(2)  604-615
SWEET11 and 15 as key players in seed filling in rice.
Zhang L, Hu Y, Li P, Wang X, Dong H
Australasian Plant Pathology 2018  48(11) 
Silencing of an aquaporin gene diminishes bacterial blight disease in rice
Wang M., Zhang T., Peng H., Luo S., Tan J., Jiang K., Heng Y., Zhang X., Guo X., Zheng J., Cheng Z.
Front Plant Sci 2018  9  560
Rice <i>Premature leaf senescence 2</i>, Encoding a Glycosyltransferase (GT), Is Involved in leaf senescence.
Wu Y., Lee S.K., Yoo Y., Wei J., Kwon S.Y., Lee S.W., Jeon J.S., An G.
Mol Plant 2018  11(6)  833-845
Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET Genes.
Zhu X., Shen W., Huang J., Zhang T., Zhang X., Cui Y., Sang X., Ling Y., Li Y., Wang N., Zhao F., Zhang C., Yang Z., He G.
Plant Cell Physiol. 2018  59(3)  487-499
Mutation of the OsSAC1 Gene, which Encodes an Endoplasmic Reticulum Protein with an Unknown Function, Causes Sugar Accumulation in Rice Leaves.
Li X., Wang Y., Duan E., Qi Q., Zhou K., Lin Q., Wang D., Wang Y., Long W., Zhao Z., Cheng Z., Lei C., Zhang X., Guo X., Wang J., Wu C., Jiang L., Wang C., Wan J.
Plant Cell Rep. 2018  37(2)  329-346
OPEN GLUME1: a key enzyme reducing the precursor of JA, participates in carbohydrate transport of lodicules during anthesis in rice.
Li S., Tian Y., Wu K., Ye Y., Yu J., Zhang J., Liu Q., Hu M., Li H., Tong Y., Harberd N.P., Fu X.
Nature 2018  560(7720)  595-600
Modulating plant growth-metabolism coordination for sustainable agriculture.
Huang R., Hui S., Zhang M., Li P., Xiao J., Li X., Yuan M., Wang S.
Front Plant Sci 2017  8  1919
A Conserved Basal Transcription Factor Is Required for the Function of Diverse TAL Effectors in Multiple Plant Hosts.
Jiang G., Yin D., Zhao J., Chen H., Guo L., Zhu L., Zhai W.
Sci Rep 2016  6  26104
The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight.
Yuan M., Zhao J., Huang R., Li X., Xiao J., Wang S.
J Integr Plant Biol 2014  56(6)  559-70
Rice MtN3/saliva/SWEET gene family: Evolution, expression profiling, and sugar transport.
Denancé N., Szurek B., Noël LD.
Plant Cell Physiol. 2014  55(3)  469-74
Emerging functions of nodulin-like proteins in non-nodulating plant species.
Salgotra R.K., Gupta B.B., Millwood R.J., Balasubramaniam M., Stewart Jr.
Euphytica 2012  187(3)  313-323
Introgression of bacterial leaf blight resistance and aroma genes using functional marker-assisted selection in rice (Oryza sativa L.)
Verdier V., Triplett L.R., Hummel A.W., Corral R., Cernadas R.A., Schmidt C.L., Bogdanove A.J., Leach J.E.
New Phytol. 2012  196(4)  1197-207
Transcription activator-like (TAL) effectors targeting OsSWEET genes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain of Xanthomonas oryzae.
Chen L.Q., Qu X.Q., Hou B.H., Sosso D., Osorio S., Fernie A.R., Frommer W.B.
Science 2012  335(6065)  207-11
Sucrose efflux mediated by SWEET proteins as a key step for phloem transport.
Yuan T. , Li X. , Xiao J. , Wang S.
Mol Plant 2011  4(2)  300-9
Characterization of Xanthomonas oryzae-responsive cis-acting element in the promoter of rice race-specific susceptibility gene Xa13.
Rajpurohit D., Kumar R., Kumar M., Paul P., Awasthi A., Osman Basha P., Puri A., Jhang T., Singh K., Dhaliwal H.S.
Euphytica 2011  178  111-126
Pyramiding of two bacterial blight resistance and a semidwarfing gene in Type 3 Basmati using marker-assisted selection
Antony G., Zhou J., Huang S., Li T., Liu B., White F., Yang B.
Plant Cell 2010  22(11)  3864-3876
Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3.
Yuan,M., Chu,Z., Li,X., Xu,C. and Wang,S.
Plant Cell 2010  22(9)  3164-3176
The Bacterial Pathogen Xanthomonas oryzae Overcomes Rice Defenses by Regulating Host Copper Redistribution
Frank F White, Yang B.
Plant physiology 2009  150(4)  1677-86
Host and pathogen factors controlling the rice-Xanthomonas oryzae interaction.
Yuan M,Chu Z,Li X,Xu C,Wang S
Plant Cell Physiol. 2009  50  947-55
Pathogen-induced expressional loss of function is the key factor in race-specific bacterial resistance conferred by a recessive R gene xa13 in rice.
Sugio A,Yang B,Zhu T,White FF
Proc. Natl. Acad. Sci. U.S.A. 2007  104  10720-5
Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIAgamma1 and OsTFX1 during bacterial blight of rice.
Nino-Liu, D.O., P.C. Ronald and A.J. Bogdanove
Mol. Plant Pathol. 2006  7(5)  303-324
Pathogen profile Xanthomonas oryzae pathovars: model pathogens of a model crop.
Chu Z, Fu B, Yang H, Xu C, Li Z, Sanchez A, Park YJ, Bennetzen JL, Zhang Q, Wang S.
Theor. Appl. Genet. 2006  112(3)  455-461
Targeting xa13, a recessive gene for bacterial blight resistance in rice.
Yang B, Sugio A, White FF.
Proc. Natl. Acad. Sci. U.S.A. 2006  103(27)  10503-10508
Os8N3 is a host disease-susceptibility gene for bacterial blight of rice.
Chu,Z., Yuan,M., Yao,J., Ge,X., Yuan,B., Xu,C., Li,X., Fu,B., Li,Z., Bennetzen,J.L., Zhang,Q. and Wang,S.
Genes Dev. 2006  20(10)  1250-1255
Promoter mutations of an essential gene for pollen development result in disease resistance in rice.
Chu Z, Ouyang Y, Zhang J, Yang H, Wang S.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2004  271(1)  111-120
Genome-wide analysis of defense-responsive genes in bacterial blight resistance of rice mediated by the recessive R gene xa13.
Muralidharan, K., D. Krishnaveni, G.S. Laha, C.S. Reddy, M. Srinivasprasad and R. Sridhar
RGN 2003  20  96-98
Appraisal of bacterial leaf blight resistance genes in India.
Lee, K.S., E.R. Angeles and G.S. Khush
RGN 2000  17  73-74.
Inheritance of resistance to race 6 of bacterial blight in rice.
Sanchez, A.C., L.L. Ilag, D. Yang, D.S. Brar, F. Ausubel, G.S. Khush, M. Yano, T. Sasaki, Z. Li and N. Huang
Theor. Appl. Genet. 1999  98  1022-1028
Genetic and physical mapping of xa13, a recessive bacterial blight resistance gene in rice.
Taura, S., M. Asahiro and F. Shimotu
Breeding Science 1997  47(Suppl. 1)  269
Reaction of F2 population from the cross of BJ1/IR24 to the Japanese bacterial blight pathogens.
Huang, N., E.R. Angeles, J. Domingo, G. Magpantay, S. Singh, G. Zhang, N. Kumaravadivel, J. Bennett and G.S. Khush
Theor. Appl. Genet. 1997  95  313-320.
Pyramiding of bacterial blight resistance genes in rice marker-assisted selection using RFLP and PCR.
Huang, N., A. Parco, T. Mew, G. Magpantay, S. McCouch, E. Guiderdoni, J. Xu, P. Subudhi, E.R. Angeles and G.S. Khush
Molecular Breeding 1997  3  105-113.
RFLP mapping of isozymes, RAPD and QTLs for grain shape, brown planthopper resistance in a doubled haploid rice population.
Zhang, G., E.R. Angeles, M.L.P. Abenes, G.S. Khush and N. Huang
Theor. Appl. Genet. 1996  93  65-70.
RAPD and RFLP mapping of the bacterial blight resistance gene xa-13 in rice.
Zhang, G., E.R. Angeles, M.L.P. Abenes, G.S. Khush and N. Huang
RGN 1994  11  142-144.
Molecular mapping of a bacterial blight resistance gene on chromosome 8 in rice.
Mir, G.N. and G.S. Khush
Indian J. Genet. & Plant Breed. 1991  51(1)  72-78.
Genetics of resistance to bacterial blight in rice (Oryza sativa L.).
Sahu, R.K. and G.S. Khush
Plant Breeding 1989  102(3)  232-236.
Genetics of resistance to four races of Xanthomonas campestris pv. oryzae in some rice cultivars.
Kinoshita, T.
RGN 1988  5  3-6.
I. Registration of new gene symbols.
Ogawa, T., L. Lin, R.E. Tabien and G.S. Khush
RGN 1987  4  98-100.
A new recessive gene for resistance to bacterial blight of rice.
TextPresso Search Search textpresso for XA13 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0061021
Gene Ontology pollen development( GO:0009555 )
phloem loading( GO:0009915 )
copper ion transport( GO:0006825 )
defense response( GO:0006952 )
sugar transmembrane transporter activity( GO:0051119 )
sucrose transmembrane transporter activity( GO:0008515 )
seed maturation( GO:0010431 )
endosperm development( GO:0009960 )
carbohydrate transmembrane transport( GO:0034219 )
sucrose transport( GO:0015770 )
plasma membrane( GO:0005886 )
protein binding( GO:0005515 )
integral to plasma membrane( GO:0005887 )
response to bacterium( GO:0009617 )
integral to membrane( GO:0016021 )
leaf senescence( GO:0010150 )
defense response to bacterium( GO:0042742 )
response to salt stress( GO:0009651 )
response to molecule of bacterial origin( GO:0002237 )
Trait Ontology leaf area( TO:0000540 )
yield trait( TO:0000371 )
aborted uni-nucleate stage( TO:0000060 )
spikelet fertility( TO:0000180 )
salt tolerance( TO:0006001 )
leaf senescence( TO:0000249 )
seed maturation( TO:0002661 )
starch content( TO:0000696 )
endosperm related trait( TO:0000575 )
bacterial blight disease resistance( TO:0000175 )
Plant Ontology leaf margin( PO:0020128 )
leaf apex( PO:0020137 )
seed maturation stage( PO:0007632 )
nucellus( PO:0020020 )
nucellar projection( PO:0008007 )
nucellar epidermis( PO:0008006 )
aleurone layer( PO:0005360 )
4 leaf senescence stage( PO:0001054 )
anther( PO:0009066 )
Related Strains
Phenotype images
Last updated
Nov 8, 2022