Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol LSI1
Gene Symbol Synonym lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
Gene Name Synonym low silicon rice, Low silicon rice 1, Silicon transporter LSI1, Aquaporin NIP2-1, NOD26-like intrinsic protein 2-1, Silicon transporter LSI1, Low silicon protein 1, NOD26 LIKE INTRINSIC PROTEIN 2;1, low Si uptake, Low Si 1
Protein Name AQUAPORIN NIP2-1
Allele lsi1
Chromosome No. 2
Explanation Q6Z2T3. GRO:0007140; B-reproductive stage ; GRO:0007139; A-vegetative stage. AB222272. lsi(t) (=low Si uptake) in Arimura et al. 2002. TO:0006054: arsenic concentration. Aquaporins (arsenite transport). GO:1901684: arsenate ion transmembrane transport. TO:0001048: silicon content trait. GO:0035445: borate transmembrane transport. TO:1000053: shoot system boron content. TO:1000026: root system arsenic content. GO:0035864: response to potassium ion.
Trait Class Vegetative organ - Root
Seed - Physiological traits - Storage substances
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK069842
MSU ID LOC_Os02g51110.1
RAP ID Os02g0745100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Adhikari A., Khan M.A., Imran M., Lee K.E., Kang S.M., Shin J.Y., Joo G.J., Khan M., Yun B.W., Lee I.J.
Front Plant Sci 2022  13  816858
The Combined Inoculation of <i>Curvularia lunata</i> AR11 and Biochar Stimulates Synthetic Silicon and Potassium Phosphate Use Efficiency, and Mitigates Salt and Drought Stresses in Rice.
Wu Q., Shi J., Jiang X., Wu H.
Nanomaterials (Basel) 2021  11(9) 
Regulatory Mechanism of Copper Oxide Nanoparticles on Uptake of Different Species of Arsenic in Rice.
Ma C., Hao Y., Zhao J., Zuverza-Mena N., Meselhy A.G., Dhankher O.P., Rui Y., White J.C., Xing B.
Nanomaterials (Basel) 2021  11(4) 
Graphitic Carbon Nitride (C3N4) Reduces Cadmium and Arsenic Phytotoxicity and Accumulation in Rice (<i>Oryza sativa</i> L.).
Tripathi D.K., Rai P., Guerriero G., Sharma S., Corpas F.J., Singh V.P.
J. Exp. Bot. 2020   
Silicon induces adventitious root formation in rice (Oryza sativa L.) under arsenate stress with the involvement of nitric oxide and indole-3-acetic acid.
Wang Y., Wang J., Zhao X., Yang S., Huang L., Du F., Li Z., Zhao X., Fu B., Wang W.
Rice (N Y) 2020  13(1)  50
Overexpression of the Transcription Factor Gene OsSTAP1 Increases salt tolerance in Rice.
Pan D., Yi J., Li F., Li X., Liu C., Wu W., Tao T.
BMC Plant Biol. 2020  20(1)  133
Dynamics of gene expression associated with arsenic uptake and transport in rice during the whole growth period.
Fang C., Zhang P., Li L., Yang L., Mu D., Yan X., Li Z., Lin W.
BMC Plant Biol. 2020  20(1)  236
serine hydroxymethyltransferase localised in the endoplasmic reticulum plays a role in scavenging H2O2 to enhance rice chilling tolerance.
Réthoré E., Ali N., Yvin J.C., Hosseini S.A.
Int J Mol Sci 2020  21(10) 
Silicon Regulates Source to Sink Metabolic Homeostasis and Promotes Growth of Rice Plants Under Sulfur Deficiency.
Lin Y., Sun Z., Li Z., Xue R., Cui W., Sun S., Liu T., Zeng R., Song Y.
Front Plant Sci 2019  10  652
Deficiency in Silicon Transporter Lsi1 Compromises Inducibility of Anti-herbivore Defense in Rice Plants.
Wang Z., Yamaji N., Huang S., Zhang X., Shi M., Fu S., Yang G., Jian Feng Ma, Xia J.
Plant Cell 2019  31(11)  2636-2648
oscasp1 Is Required for Casparian Strip Formation at Endodermal Cells of Rice Roots for Selective Uptake of Mineral Elements.
Himeno S., Sumi D., Fujishiro H.
Toxicol Res 2019  35(4)  311-317
Toxicometallomics of Cadmium, Manganese and Arsenic with Special Reference to the Roles of Metal Transporters.
Shao J.F., Yamaji N., Liu X.W., Yokosho K., Shen R.F., Ma J.F.
Plant Physiol. 2018  176(2)  1739-1750
Preferential Distribution of Boron to Developing Tissues Is Mediated by the Intrinsic Protein OsNIP3.
Sun S.K., Chen Y., Che J., Konishi N., Tang Z., Miller A.J., Ma J.F., Zhao F.J.
New Phytol. 2018  219(2)  641-653
Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.
Wang F.Z., Chen M.X., Yu L.J., Xie L.J., Yuan L.B., Qi H., Xiao M., Guo W., Chen Z., Yi K., Zhang J., Qiu R., Shu W., Xiao S., Chen Q.F.
Front Plant Sci 2017  8  1868
OsARM1, an R2R3 MYB transcription factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.
Fang C., Zhang P., Jian X., Chen W., Lin H., Li Y., Lin W.
Plant Sci. 2017  262  115-126
Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress.
Chen Y., Han Y.H., Cao Y., Zhu Y.G., Rathinasabapathi B., Ma L.Q.
Front Plant Sci 2017  8  268
Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice.
Mitani-Ueno N., Yamaji N., Ma J.F.
Plant Cell Physiol. 2016  57(12)  2510-2518
High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.
Yamaji N., Sakurai G., Mitani-Ueno N., Ma J.F.
Proc. Natl. Acad. Sci. U.S.A. 2015   
Orchestration of three transporters and distinct vascular structures in node for intervascular transfer of silicon in rice.
Denancé N., Szurek B., Noël LD.
Plant Cell Physiol. 2014  55(3)  469-74
Emerging functions of nodulin-like proteins in non-nodulating plant species.
Ye M., Song Y., Long J., Wang R., Baerson S.R., Pan Z., Zhu-Salzman K., Xie J., Cai K., Luo S., Zeng R.
Proc. Natl. Acad. Sci. U.S.A. 2013  110(38)  E3631-9
Priming of jasmonate-mediated antiherbivore defense responses in rice by silicon.
Zhang Y.X., Liu J.G., Chai T.Y., Jin L.
Progress in Biochemistry and Biophysics 2011  38  400-407
Advances in the uptake and translocation of silicon in plants
Chang-Xin Fang, Qing-Shui Wang, Yu Y., Qing-Mao Li, Hai-Li Zhang, Xing-Chun Wu, Chen T., Wen-Xiong Lin
Plant Growth Regul. 2011  65(1)  1-10
Suppression and overexpression of Lsi1 induce differential gene expression in rice under ultraviolet radiation
Zhao X.Q., Mitani N., Yamaji N., Shen R.F., Ma J.F.
Plant Physiol. 2010  153(4)  1871-1877
Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice.
Zhao FJ, Ago Y, Mitani N, Li RY, Su YH, Yamaji N, McGrath SP, Ma JF.
New Phytol. 2010  186(2)  392-9.
The role of the rice aquaporin Lsi1 in arsenite efflux from roots.
Li RY,Ago Y,Liu WJ,Mitani N,Feldmann J,McGrath SP,Ma JF,Zhao FJ
Plant Physiol. 2009  150(4)  2071-80
The rice aquaporin Lsi1 mediates uptake of methylated arsenic species.
Bienert GP,Thorsen M,Schussler MD,Nilsson HR,Wagner A,Tamas MJ,Jahn TP
BMC Biol. 2008  6  26
A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across membranes.
Yamaji,N., Mitatni,N. and Ma,J.F.
Plant Cell 2008  20(5)  1381-1389
A transporter regulating silicon distribution in rice shoots
Ma JF,Yamaji N,Mitani N,Xu XY,Su YH,McGrath SP,Zhao FJ
Proc. Natl. Acad. Sci. U.S.A. 2008  105  9931-5
Transporters of arsenite in rice and their role in arsenic accumulation in rice grain.
Mitani N,Yamaji N,Ma JF
Pflugers Arch 2008  456  679-86
Characterization of substrate specificity of a rice silicon transporter, Lsi1.
Ma JF,Yamaji N,Tamai K,Mitani N
Plant Physiol. 2007  145  919-24
Genotypic difference in silicon uptake and expression of silicon transporter genes in rice.
Ma, Jian Feng
Plant Physiol. 2007  143(3)  1306-1313
Spatial Distribution and Temporal Variation of the Rice Silicon Transporter Lsi1.
Ma,J.F., Yamaji,N., Mitani,N., Tamai,K., Konishi,S., Fujiwara,T., Katsuhara,M. and Yano,M.
Nature 2007  448(7150)  209-212
An efflux transporter of silicon in rice
Kerrie L. Forrest, Bhave M.
Funct. Integr. Genomics 2007  7  263-289
Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype
Ma,J.F., Tamai,K., Yamaji,N., Mitani,N., Konishi,S., Katsuhara,M., Ishiguro,M., Murata,Y. and Yano,M.
Nature 2006  440(7084)  688-691
A silicon transporter in rice.
Sakurai J, Ishikawa F, Yamaguchi T, Uemura M, Maeshima M
Plant Cell Physiol. 2005  46(9)  1568-77
Identification of 33 rice aquaporin genes and analysis of their expression and function
Ma JF, Mitani N, Nagao S, Konishi S, Tamai K, Iwashita T, Yano M.
Plant Physiol. 2004  136(2)  3284-3289
Characterization of the silicon uptake system and molecular mapping of the silicon transporter gene in rice.
Jian Feng Ma, Tamai K., Ichii M., Guo Feng Wu
Plant Physiol. 2002  130(4)  2111-7
A rice mutant defective in Si uptake.
Arimura-M, Taketa-S, Ma-J-F, Wu-G-F, Tamai-K, Ichii-M
Breeding Res. 2002  4(Suppl. 1)  73
Molecular mapping of a gene for Si uptake in rice
TextPresso Search Search textpresso for LSI1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0080009,GR:0061478
Gene Ontology response to symbiotic fungus( GO:0009610 )
response to copper ion( GO:0046688 )
adventitious root development( GO:0048830 )
response to auxin stimulus( GO:0009733 )
response to salt stress( GO:0009651 )
response to starvation( GO:0042594 )
response to inorganic substance( GO:0010035 )
membrane( GO:0016020 )
transporter activity( GO:0005215 )
plasma membrane( GO:0005886 )
silicate transmembrane transporter activity( GO:0015115 )
silicate transport( GO:0015708 )
Casparian strip( GO:0048226 )
transmembrane transport( GO:0055085 )
response to arsenic( GO:0046685 )
antimonite transmembrane transporter activity( GO:0015104 )
response to cold( GO:0009409 )
integral to membrane( GO:0016021 )
response to herbivore( GO:0080027 )
defense response to insect( GO:0002213 )
Trait Ontology panicle color( TO:0000201 )
insect damage resistance( TO:0000261 )
silicon sensitivity( TO:0000031 )
cold tolerance( TO:0000303 )
grain yield( TO:0000396 )
sulfur sensitivity( TO:0000007 )
salt tolerance( TO:0006001 )
auxin sensitivity( TO:0000163 )
copper sensitivity( TO:0000021 )
Plant Ontology root endodermis( PO:0005059 )
exodermis( PO:0005772 )
lateral root( PO:0020121 )
primary root( PO:0020127 )
root( PO:0009005 )
Related Strains
Phenotype images
Last updated
Jun 22, 2022