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Basic Information
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CGSNL Gene Symbol
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LSI1
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Gene Symbol Synonym
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lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
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CGSNL Gene Name
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LOW SILICON RICE 1
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Gene Name Synonym
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low silicon rice, Low silicon rice 1, Silicon transporter LSI1, Aquaporin NIP2-1, NOD26-like intrinsic protein 2-1, Silicon transporter LSI1, Low silicon protein 1, NOD26 LIKE INTRINSIC PROTEIN 2;1, low Si uptake, Low Si 1
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Protein Name
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AQUAPORIN NIP2-1
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Allele
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lsi1
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Chromosome No.
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2
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Explanation
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Q6Z2T3. GRO:0007140; B-reproductive stage ; GRO:0007139; A-vegetative stage. AB222272. lsi(t) (=low Si uptake) in Arimura et al. 2002. TO:0006054: arsenic concentration. Aquaporins (arsenite transport). GO:1901684: arsenate ion transmembrane transport. TO:0001048: silicon content trait. GO:0035445: borate transmembrane transport. TO:1000053: shoot system boron content. TO:1000026: root system arsenic content. GO:0035864: response to potassium ion.
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Trait Class
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Vegetative organ - Root
Seed - Physiological traits - Storage substances
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK069842
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MSU ID
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LOC_Os02g51110.1
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RAP ID
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Os02g0745100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Yang C., Wang C., Khan Z., Duan S., Li Z., Shen H.
Front Plant Sci 2023 14 1135080
Algal polysaccharides-Selenium nanoparticles regulate the uptake and distribution of selenium in rice plants.
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Adhikari A., Khan M.A., Imran M., Lee K.E., Kang S.M., Shin J.Y., Joo G.J., Khan M., Yun B.W., Lee I.J.
Front Plant Sci 2022 13 816858
The Combined Inoculation of <i>Curvularia lunata</i> AR11 and Biochar Stimulates Synthetic Silicon and Potassium Phosphate Use Efficiency, and Mitigates Salt and Drought Stresses in Rice.
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Ma C., Hao Y., Zhao J., Zuverza-Mena N., Meselhy A.G., Dhankher O.P., Rui Y., White J.C., Xing B.
Nanomaterials (Basel) 2021 11(4)
Graphitic Carbon Nitride (C3N4) Reduces Cadmium and Arsenic Phytotoxicity and Accumulation in Rice (<i>Oryza sativa</i> L.).
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Wu Q., Shi J., Jiang X., Wu H.
Nanomaterials (Basel) 2021 11(9)
Regulatory Mechanism of Copper Oxide Nanoparticles on Uptake of Different Species of Arsenic in Rice.
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Fang C., Zhang P., Li L., Yang L., Mu D., Yan X., Li Z., Lin W.
BMC Plant Biol. 2020 20(1) 236
serine hydroxymethyltransferase localised in the endoplasmic reticulum plays a role in scavenging H2O2 to enhance rice chilling tolerance.
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Tripathi D.K., Rai P., Guerriero G., Sharma S., Corpas F.J., Singh V.P.
J. Exp. Bot. 2020
Silicon induces adventitious root formation in rice (Oryza sativa L.) under arsenate stress with the involvement of nitric oxide and indole-3-acetic acid.
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Wang Y., Wang J., Zhao X., Yang S., Huang L., Du F., Li Z., Zhao X., Fu B., Wang W.
Rice (N Y) 2020 13(1) 50
Overexpression of the Transcription Factor Gene OsSTAP1 Increases salt tolerance in Rice.
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Réthoré E., Ali N., Yvin J.C., Hosseini S.A.
Int J Mol Sci 2020 21(10)
Silicon Regulates Source to Sink Metabolic Homeostasis and Promotes Growth of Rice Plants Under Sulfur Deficiency.
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Pan D., Yi J., Li F., Li X., Liu C., Wu W., Tao T.
BMC Plant Biol. 2020 20(1) 133
Dynamics of gene expression associated with arsenic uptake and transport in rice during the whole growth period.
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Himeno S., Sumi D., Fujishiro H.
Toxicol Res 2019 35(4) 311-317
Toxicometallomics of Cadmium, Manganese and Arsenic with Special Reference to the Roles of Metal Transporters.
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Wang Z., Yamaji N., Huang S., Zhang X., Shi M., Fu S., Yang G., Jian Feng Ma, Xia J.
Plant Cell 2019 31(11) 2636-2648
oscasp1 Is Required for Casparian Strip Formation at Endodermal Cells of Rice Roots for Selective Uptake of Mineral Elements.
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Lin Y., Sun Z., Li Z., Xue R., Cui W., Sun S., Liu T., Zeng R., Song Y.
Front Plant Sci 2019 10 652
Deficiency in Silicon Transporter Lsi1 Compromises Inducibility of Anti-herbivore Defense in Rice Plants.
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Sun S.K., Chen Y., Che J., Konishi N., Tang Z., Miller A.J., Ma J.F., Zhao F.J.
New Phytol. 2018 219(2) 641-653
Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.
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Shao J.F., Yamaji N., Liu X.W., Yokosho K., Shen R.F., Ma J.F.
Plant Physiol. 2018 176(2) 1739-1750
Preferential Distribution of Boron to Developing Tissues Is Mediated by the Intrinsic Protein OsNIP3.
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Wang F.Z., Chen M.X., Yu L.J., Xie L.J., Yuan L.B., Qi H., Xiao M., Guo W., Chen Z., Yi K., Zhang J., Qiu R., Shu W., Xiao S., Chen Q.F.
Front Plant Sci 2017 8 1868
OsARM1, an R2R3 MYB transcription factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.
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Chen Y., Han Y.H., Cao Y., Zhu Y.G., Rathinasabapathi B., Ma L.Q.
Front Plant Sci 2017 8 268
Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice.
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Fang C., Zhang P., Jian X., Chen W., Lin H., Li Y., Lin W.
Plant Sci. 2017 262 115-126
Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress.
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Mitani-Ueno N., Yamaji N., Ma J.F.
Plant Cell Physiol. 2016 57(12) 2510-2518
High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.
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Yamaji N., Sakurai G., Mitani-Ueno N., Ma J.F.
Proc. Natl. Acad. Sci. U.S.A. 2015
Orchestration of three transporters and distinct vascular structures in node for intervascular transfer of silicon in rice.
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Denancé N., Szurek B., Noël LD.
Plant Cell Physiol. 2014 55(3) 469-74
Emerging functions of nodulin-like proteins in non-nodulating plant species.
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Ye M., Song Y., Long J., Wang R., Baerson S.R., Pan Z., Zhu-Salzman K., Xie J., Cai K., Luo S., Zeng R.
Proc. Natl. Acad. Sci. U.S.A. 2013 110(38) E3631-9
Priming of jasmonate-mediated antiherbivore defense responses in rice by silicon.
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Chang-Xin Fang, Qing-Shui Wang, Yu Y., Qing-Mao Li, Hai-Li Zhang, Xing-Chun Wu, Chen T., Wen-Xiong Lin
Plant Growth Regul. 2011 65(1) 1-10
Suppression and overexpression of Lsi1 induce differential gene expression in rice under ultraviolet radiation
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Zhang Y.X., Liu J.G., Chai T.Y., Jin L.
Progress in Biochemistry and Biophysics 2011 38 400-407
Advances in the uptake and translocation of silicon in plants
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Zhao FJ, Ago Y, Mitani N, Li RY, Su YH, Yamaji N, McGrath SP, Ma JF.
New Phytol. 2010 186(2) 392-9.
The role of the rice aquaporin Lsi1 in arsenite efflux from roots.
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Zhao X.Q., Mitani N., Yamaji N., Shen R.F., Ma J.F.
Plant Physiol. 2010 153(4) 1871-1877
Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice.
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Li RY,Ago Y,Liu WJ,Mitani N,Feldmann J,McGrath SP,Ma JF,Zhao FJ
Plant Physiol. 2009 150(4) 2071-80
The rice aquaporin Lsi1 mediates uptake of methylated arsenic species.
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Yamaji,N., Mitatni,N. and Ma,J.F.
Plant Cell 2008 20(5) 1381-1389
A transporter regulating silicon distribution in rice shoots
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Mitani N,Yamaji N,Ma JF
Pflugers Arch 2008 456 679-86
Characterization of substrate specificity of a rice silicon transporter, Lsi1.
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Ma JF,Yamaji N,Mitani N,Xu XY,Su YH,McGrath SP,Zhao FJ
Proc. Natl. Acad. Sci. U.S.A. 2008 105 9931-5
Transporters of arsenite in rice and their role in arsenic accumulation in rice grain.
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Bienert GP,Thorsen M,Schussler MD,Nilsson HR,Wagner A,Tamas MJ,Jahn TP
BMC Biol. 2008 6 26
A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across membranes.
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Ma, Jian Feng
Plant Physiol. 2007 143(3) 1306-1313
Spatial Distribution and Temporal Variation of the Rice Silicon Transporter Lsi1.
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Ma JF,Yamaji N,Tamai K,Mitani N
Plant Physiol. 2007 145 919-24
Genotypic difference in silicon uptake and expression of silicon transporter genes in rice.
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Kerrie L. Forrest, Bhave M.
Funct. Integr. Genomics 2007 7 263-289
Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype
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Ma,J.F., Yamaji,N., Mitani,N., Tamai,K., Konishi,S., Fujiwara,T., Katsuhara,M. and Yano,M.
Nature 2007 448(7150) 209-212
An efflux transporter of silicon in rice
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Ma,J.F., Tamai,K., Yamaji,N., Mitani,N., Konishi,S., Katsuhara,M., Ishiguro,M., Murata,Y. and Yano,M.
Nature 2006 440(7084) 688-691
A silicon transporter in rice.
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Sakurai J, Ishikawa F, Yamaguchi T, Uemura M, Maeshima M
Plant Cell Physiol. 2005 46(9) 1568-77
Identification of 33 rice aquaporin genes and analysis of their expression and function
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Ma JF, Mitani N, Nagao S, Konishi S, Tamai K, Iwashita T, Yano M.
Plant Physiol. 2004 136(2) 3284-3289
Characterization of the silicon uptake system and molecular mapping of the silicon transporter gene in rice.
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Jian Feng Ma, Tamai K., Ichii M., Guo Feng Wu
Plant Physiol. 2002 130(4) 2111-7
A rice mutant defective in Si uptake.
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Arimura-M, Taketa-S, Ma-J-F, Wu-G-F, Tamai-K, Ichii-M
Breeding Res. 2002 4(Suppl. 1) 73
Molecular mapping of a gene for Si uptake in rice
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TextPresso Search
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Search textpresso for LSI1
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0080009,GR:0061478
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Ontologies
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Gene Ontology
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response to selenium ion( GO:0010269 )
response to symbiotic fungus( GO:0009610 )
response to copper ion( GO:0046688 )
adventitious root development( GO:0048830 )
response to auxin stimulus( GO:0009733 )
response to salt stress( GO:0009651 )
response to starvation( GO:0042594 )
response to inorganic substance( GO:0010035 )
membrane( GO:0016020 )
transporter activity( GO:0005215 )
plasma membrane( GO:0005886 )
silicate transmembrane transporter activity( GO:0015115 )
silicate transport( GO:0015708 )
Casparian strip( GO:0048226 )
transmembrane transport( GO:0055085 )
response to arsenic( GO:0046685 )
antimonite transmembrane transporter activity( GO:0015104 )
response to cold( GO:0009409 )
integral to membrane( GO:0016021 )
response to herbivore( GO:0080027 )
defense response to insect( GO:0002213 )
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Trait Ontology
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panicle color( TO:0000201 )
insect damage resistance( TO:0000261 )
silicon sensitivity( TO:0000031 )
cold tolerance( TO:0000303 )
grain yield( TO:0000396 )
sulfur sensitivity( TO:0000007 )
salt tolerance( TO:0006001 )
auxin sensitivity( TO:0000163 )
copper sensitivity( TO:0000021 )
selenium sensitivity( TO:0000032 )
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Plant Ontology
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root endodermis( PO:0005059 )
exodermis( PO:0005772 )
lateral root( PO:0020121 )
primary root( PO:0020127 )
root( PO:0009005 )
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Related Strains
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Phenotype images
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Last updated
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Jun 23, 2023
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