Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SHO1
Gene Symbol Synonym sho1, DCL4, OsDCL4, Os DCL4, Dcl4
CGSNL Gene Name SHOOT ORGANIZATION 1
Gene Name Synonym shoot organization 1, shoot organization-1, shoot organization1, Endoribonuclease Dicer homolog 4, Dicer-like protein 4, Protein SHOOT ORGANIZATION 1, Oryza sativa dicer-like4, Oryza sativa dicer-like 4, Dicer like 4
Protein Name DICER-LIKE PROTEIN 4
Allele sho1-1, sho1-2, sho1-3, sho1-4,sho1-5, sho1-6, sho1-7, sho1-8, Osdcl4-1
Chromosome No. 4
Explanation Dicer-like protein, DICER. EC=3.1.26.-A7LFZ6. PO:0009009; embryo ; PO:0009025; leaf. GRO:0007047; 02-seedling ; GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. an Ortholog of Arabidopsis DCL4. AB353922. EU009924. LOC_Os04g43050. a predicted lethal-phenotype gene in Lloyd et al. 2015.
Trait Class Vegetative organ - Shoot apical meristem(SAM)
Seed - Morphological traits - Embryo
Tolerance and resistance - Disease resistance
Expression
Sequence/Locus
cDNA Accession No. -
RAP ID Os04g0509300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Ta K.N., Sabot F., Adam H., Vigouroux Y., De Mita S., Ghesquière A., Do N.V., Gantet P., Jouannic S.
Rice (N Y) 2016  9(1)  10
miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species.
Lloyd J.P., Seddon A.E., Moghe G.D., Simenc M.C., Shiu S.H.
Plant Cell 2015   
Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes.
Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.
Plant Sci. 2015  237  24-32
Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.
Komiya R., Ohyanagi H., Niihama M., Watanabe T., Nakano M., Kurata N., Nonomura K.I.
Plant J. 2014  78(3)  385-97
Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs.
Song X., Li P., Zhai J., Zhou M., Ma L., Liu B., Jeong D.H., Nakano M., Cao S., Liu C., Chu C., Wang X.J., Green P.J., Meyers B.C., Cao X.
Plant J. 2012  69(3)  462-74
Roles of DCL4 and DCL3b in rice phased small RNA biogenesis.
Song X., Wang D., Ma L., Chen Z., Li P., Cui X., Liu C., Cao S., Chu C., Tao Y., Cao X.
Plant J. 2012  71(3)  378-89
Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
Abe M,Yoshikawa T,Nosaka M,Sakakibara H,Sato Y,Nagato Y,Itoh JI
Plant Physiol. 2010  154(3)  1335-46
WAVY LEAF 1, an Ortholog of Arabidopsis HEN1, Regulates Shoot Development by Maintaining microRNA and trans-acting siRNA Accumulation in Rice.
Nagasaki H, Itoh J, Hayashi K, Hibara K, Satoh-Nagasawa N, Nosaka M, Mukouhata M, Ashikari M, Kitano H, Matsuoka M, Nagato Y, Sato Y.
Proc. Natl. Acad. Sci. U.S.A. 2007  104(37)  14867-71
The small interfering RNA production pathway is required for shoot meristem initiation in rice.
Liu,B., Chen,Z., Song,X., Liu,C., Cui,X., Zhao,X., Fang,J., Xu,W., Zhang,H., Wang,X., Chu,C., Deng,X., Xue,Y. and Cao,X.
Plant Cell 2007  19(9)  2705-2718
Oryza sativa Dicer-like4 Reveals a Key Role for Small Interfering RNA Silencing in Plant Development
Mukohhata, M., M. Ashikari, M. Miwa, T. Sasaki, Y. Nagato, H. Kitano and M. Matsuoka
RGN 2000  17  24-26
High resolution mapping of a rice gene affecting shoot organization, SHO1.
Itoh, J.-I., Kitano, H., Matsuoka, M. and Nagato, Y.
Plant Cell 2000  12  2161-2174
SHOOT ORGANIZATION genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice.
Itoh, J., H. Kitano and Y. Nagato
RGN 1996  13  100-102.
Genes affecting shoot apical meristem and leaf primordia differentiation.
Hong, S.K., T, Aoki, H. Kitano, H. Satoh and Y. Nagato
Dev Genet. 1995  16  298-310.
Phenotypic diversity of 188 rice embryo mutants.
Tamura, Y., Kitano, H., Satoh, H. and Nagato, Y.
Plant Sci. 1992  82  91-99.
A gene profoundly affecting shoot organization in the early phase of rice development.
TextPresso Search Search textpresso for SHO1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060883 GR:0101252
Ontologies
Gene Ontology serine-type endopeptidase activity( GO:0004252 )
multicellular organismal development( GO:0007275 )
tissue development( GO:0009888 )
production of ta-siRNAs involved in RNA interference( GO:0010267 )
magnesium ion binding( GO:0000287 )
double-stranded RNA binding( GO:0003725 )
ribonuclease III activity( GO:0004525 )
ATP binding( GO:0005524 )
ATP-dependent helicase activity( GO:0008026 )
polarity specification of adaxial/abaxial axis( GO:0009944 )
maintenance of shoot apical meristem identity( GO:0010492 )
manganese ion binding( GO:0030145 )
nucleus( GO:0005634 )
organ morphogenesis( GO:0009887 )
defense response to fungus( GO:0050832 )
reproductive structure development( GO:0048608 )
Trait Ontology leaf shape( TO:0000492 )
embryo related trait( TO:0000064 )
blast disease( TO:0000074 )
Plant Ontology plant embryo( PO:0009009 )
vascular leaf( PO:0009025 )
Related Strains
Lethal Embryo Mutation strain 1
Phenotype images
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Photo from Y. Nagato
Last updated
2016-06-13 21:28:28.423


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