Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol FC1
Gene Symbol Synonym fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1
Gene Name Synonym fine culm1, fine culm 1, fine culm-1, lateral branching-1(t), teosinte-branching 1, Fine culm 1, teosinte branched1 protein, teosinte branched 1 protein, transcription factor OsTB1, teosinte branched1, FINE CULM1
Allele fc1, fc1-1, fc1-2
Chromosome No. 3
Explanation Many tillers with fine culm and normal height. [132] This gene controls lateral branching of shoot system. OsTB1 is a countrpart of maize TB1 (TEOSINTE BRANCHED 1), being located on chromosome 3 closely linked with RFLP marker C944. Negatively regulate the lateral branching. transcription factor TCP family. a negative regulator of tiller bud outgrowth. AB088343. AF322143, AY043215, AY286002. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage. LOC_Os03g49880. GO:1901698: response to nitrogen compound.
Trait Class Vegetative organ - Culm
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
cDNA Accession No. AK107083
RAP ID Os03g0706500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Locate(cM) 146.0
Link map Classical linkage map
Wang J., Yu H., Xiong G., Lu Z., Jiao Y., Meng X., Liu G., Chen X., Wang Y., Li J.
Plant Cell 2017  29(4)  697-707
Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.
Deshpande G.M., Ramakrishna K., Chongloi G.L., Vijayraghavan U.
J. Exp. Bot. 2015  66(9)  2773-84
Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
Xu J., Zha M., Li Y., Ding Y., Chen L., Ding C., Wang S.
Plant Cell Rep. 2015  34(9)  1647-62
The interaction between nitrogen availability and auxin, cytokinin, and strigolactone in the control of shoot branching in rice (Oryza sativa L.).
Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014  537(1)  1-5
Tillering and panicle branching genes in rice.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Guo S., Xu Y., Liu H., Mao Z., Zhang C., Ma Y., Zhang Q., Meng Z., Chong K.
Nat Commun 2013  4  1566
The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
Lu Z., Yu H., Xiong G., Wang J., Jiao Y., Liu G., Jing Y., Meng X., Hu X., Qian Q., Fu X., Wang Y., Li J.
Plant Cell 2013  25(10)  3743-59
Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture.
Mondragón-Palomino M., Trontin C.
Ann. Bot. 2011  107(9)  1533-44
High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots.
Minakuchi K., Kameoka H., Yasuno N., Umehara M., Luo L., Kobayashi K., Hanada A., Ueno K., Asami T., Yamaguchi S., KYOZUKA J.
Plant Cell Physiol. 2010  51(7)  1127-35
FINE culm1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice.
Rita SHARMA, Meenu KAPOOR, Akhilesh K. TYAGI, Sanjay KAPOOR
J Plant Mol Biol Biotechnol 2010  1(1)  24-38
Comparative transcript profiling of TCP family genes provide insight into gene functions and diversification in rice and Arabidopsis
Yuan,Z., Gao,S., Xue,D.W., Luo,D., Li,L.T., Ding,S.Y., Yao,X., Wilson,Z.A., Qian,Q. and Zhang,D.B.
Plant Physiol. 2009  149(1)  235-244
RETARDED PALEA1 (REP1) Controls Palea Development and Floral Zygomorphy in Rice
Arite T, Iwata H, Ohshima K, Maekawa M, Nakajima M, Kojima M, Sakakibara H, Kyozuka J.
Plant J. 2007  51(6)  1019-1029
DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.
Yeu S.Y., Park B.S., Sang W.G., Choi Y.D., Kim M.C., Song J.T., Paek N-C, Koh H-J, Seo H.S.
Journal of Plant Biology 2007  50(5)  600-604
The Serine proteinase inhibitor OsSerpin Is a Potent Tillering Regulator in Rice
Takeda, T., Y. Suma, M. Suzuki, H. Kitano, M. Ueguchi-Tanaka, M. Ashikari, M. Matsuoka and C. Ueguchi
Plant J. 2003  33 (3)  513-520
The OsTB1 gene negatively regulates lateral branching in rice.
Lukens,L. and Doebley,J.
Mol. Biol. Evol. 2001  18(4)  627-638
Molecular evolution of the teosinte branched gene among maize and related grasses.
Yoshimura, A., O. Ideta, T. Matsumoto, T. Tsunematsu and N. Iwata
Japan. J. Breed. 1992  42(Suppl. 1)  168-169.
Integration of conventional and RFLP linkage maps in rice. 1. On chromosomes 1, 2, 3 and 4.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1985  35(Suppl. 1)  204-205.
Linkage studies in rice.On the loci of some marker genes locating on the chromosome 5.
Iwata, N. and T. Omura
Jpn. J. Genet. 1984  59(3)  199-204.
Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1979  29(Suppl. 2)  182-183.
Linkage studies in rice. New genes belonging to the 11th linkage group.
Omura, T., N. Iwata and H. Satoh
J. Fac. Agr. Kyushu Univ. 1978  23  85-93.
Linkage studies in rice (Oryza sativa L.). On some virescent and chlorina mutants.
Iwata, N., T. Omura and H. Satoh
Japan. J. Breed. 1978  28(Suppl. 1)  170-171.
Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.
Iwata, N. and T. Omura
J. Fac. Agr. Kyushu Univ. 1977  21  117-127.
Linkage studies in rice (Oryza sativa L.). On some mutants derived from chronic gamma irradiation.
Iwata, N. and T. Omura
Japan. J. Breed. 1970  20(Suppl. 2)  118-119.
Linkage studies in rice (Oryza sativa L).On some mutants derived from chronic gamma irradiation.
TextPresso Search Search textpresso for FC1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060322 GR:0080012
Gene Ontology nucleus( GO:0005634 )
cell cycle( GO:0007049 )
multicellular organismal development( GO:0007275 )
response to hormone stimulus( GO:0009725 )
response to auxin stimulus( GO:0009733 )
response to cytokinin stimulus( GO:0009735 )
transcription regulator activity( GO:0030528 )
regulation of shoot development( GO:0048831 )
Trait Ontology tiller number( TO:0000346 )
panicle number( TO:0000152 )
tiller bud dormancy( TO:0000661 )
shoot branching( TO:0002639 )
nitrogen sensitivity( TO:0000011 )
cytokinin sensitivity( TO:0000167 )
stem thickness( TO:0000339 )
culm number( TO:0000027 )
auxin sensitivity( TO:0000163 )
plant growth hormone sensitivity( TO:0000401 )
Plant Ontology stem( PO:0009047 )
shoot apical meristem( PO:0020148 )
inflorescence emergence stage( PO:0007041 )
axillary bud( PO:0004709 )
axillary shoot system( PO:0006343 )
Related Strains
Stocks for Genes 1
F Lines 23
Backcross Fn Generation (T65) 4
Phenotype images
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Photo from A. Yoshimura
Last updated
2017-06-20 10:44:43.778

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