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Basic Information
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CGSNL Gene Symbol
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BC1
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Gene Symbol Synonym
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bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3
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CGSNL Gene Name
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BRITTLE CULM 1
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Gene Name Synonym
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brittle culm1, BRITTLE CULM1, brittle culm-1, COBRA-like protein 5, Protein BRITTLE CULM1, Cell Wall Architecture 1, fragile plant 1, Phytochelatin synthase 3
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Protein Name
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COBRA-LIKE PROTEIN 5
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Allele
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bc1-2, bc1-1, cwa1, fp1, bc1-101
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Chromosome No.
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3
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Explanation
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Culms and leaves are brittle and easy to be broken by bending. D47139, AY328909, AY328910. A2XHZ9(indica). Q10JL1(japonica). PO:0020104; leaf sheath ; PO:0009047; stem ; PO:0000077; sclerenchyma cell ; PO:0009049; inflorescence ; PO:0009015; vascular tissue ; PO:0020039; leaf lamina ; PO:0009005; root ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.
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Trait Class
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Vegetative organ - Culm
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK069631
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MSU ID
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LOC_Os03g30250.1
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RAP ID
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Os03g0416200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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108.0
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Link map
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Classical linkage map
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References
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Wu L., Zhang M., Zhang R., Yu H., Wang H., Li J., Wang Y., Hu Z., Wang Y., Luo Z., Li L., Wang L., Peng L., Xia T.
Biotechnol Biofuels 2021 14(1) 245
Down-regulation of OsMYB103L distinctively alters beta-1,4-glucan polymerization and cellulose microfibers assembly for enhanced biomass enzymatic saccharification in rice.
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Liu S., Tang Y., Ruan N., Dang Z., Huang Y., Miao W., Xu Z., Li F.
Rice (N Y) 2020 13(1) 41
The Rice bz1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.
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Wang D., Xu T., Yin Z., Wu W., Geng H., Li L., Yang M., Cai H., Lian X.
Front Plant Sci 2020 11 369
Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.
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Wang B., Li J.
Plant Cell 2019 31(7) 1416-1417
Understanding the Molecular Bases of Agronomic Trait Improvement in Rice.
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Ye Y., Liu B., Zhao M., Wu K., Cheng W., Chen X., Liu Q., Liu Z., Fu X., Wu Y.
Plant Mol. Biol. 2015 89(4-5) 385-401
CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.
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Wu B., Zhang B., Dai Y., Zhang L., Shang-Guan K., Peng Y., Zhou Y., Zhu Z.
Plant Physiol. 2012 159(4) 1440-52
Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice.
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Shen G., Cheng Zhu2, Du Q.
Electronic Journal of Biology 2010 6(3) 73-79
Genome-wide identification of PHYTOCHELATIN and PHYTOCH_SYNTH domain-containing PHYTOCHELATIN family from rice
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Sindhu A,Langewisch T,Olek A,Multani DS,McCann MC,Vermerris W,Carpita NC,Johal G
Plant Physiol. 2007 145 1444-59
Maize Brittle stalk2 encodes a COBRA-like protein expressed in early organ development but required for tissue flexibility at maturity.
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Li,Y., Qian,Q., Zhou,Y., Yan,M., Sun,L., Zhang,M., Fu,Z., Wang,Y., Han,B., Pang,X., Chen,M. and Li,J.
Plant Cell 2003 15(9) 2020-2031
BRITTLE CULM1, Which Encodes a COBRA-Like Protein, Affects the Mechanical Properties of Rice Plants
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Qian, Q., Y.H. Li, D. Zeng, S. Teng, Z. Wang, X. Li, Z. Dong, N. Dai, L. Sun, and J. Li
Chin. Sci. Bull. 2001 46 2082-2085
Isolation and genetic characterization of a fragile plant mutant rice (Oryza sativa L).
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Eguchi, T., M. Ashikari, A. Yoshimura and N. Iwata
Breeding Science 1998 48(Suppl. 1) 80
Loci of physiological and morphological characters on RFLP linkage map in rice.
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Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1985 35(Suppl. 1) 204-205.
Linkage studies in rice.On the loci of some marker genes locating on the chromosome 5.
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Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984 187-274.
Gene analysis and linkage map.
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Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1979 29(Suppl. 2) 182-183.
Linkage studies in rice. New genes belonging to the 11th linkage group.
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Iwata, N., T. Omura and H. Satoh
Japan. J. Breed. 1978 28(Suppl. 1) 170-171.
Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.
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Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1977 27(Suppl. 1) 250-251.
Linkage studies in rice.Linkage groups for 6 genes newly described.
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Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963 53(1) 72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
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Nagao, S.
Adv. Genet. 1951 4 181-212.
Genic analysis and linkage relationship of characters in rice.
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TextPresso Search
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Search textpresso for BC1
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060068
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Ontologies
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Gene Ontology
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secondary cell wall biogenesis( GO:0009834 )
lignin metabolic process( GO:0009808 )
plasma membrane( GO:0005886 )
secondary cell wall( GO:0009531 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
anchored to membrane( GO:0031225 )
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Trait Ontology
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leaf shattering( TO:0000108 )
node shattering( TO:0000061 )
stem strength( TO:0000051 )
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Plant Ontology
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sclerenchyma cell( PO:0000077 )
root( PO:0009005 )
portion of vascular tissue( PO:0009015 )
leaf sheath( PO:0020104 )
vascular leaf( PO:0009025 )
stem( PO:0009047 )
inflorescence( PO:0009049 )
leaf lamina( PO:0020039 )
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Related Strains
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Stocks for Genes
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1
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F Lines
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5
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Backcross Fn Generation (T65)
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6
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Phenotype images
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Click to full size image in new window
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Last updated
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Jun 7, 2022
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