Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol BC1
Gene Symbol Synonym bc1, bc-1, OsBC1, CWA1, FP1, OsPCS3, PCS3
Gene Name Synonym brittle culm1, BRITTLE CULM1, brittle culm-1, COBRA-like protein 5, Protein BRITTLE CULM1, Cell Wall Architecture 1, fragile plant 1, Phytochelatin synthase 3
Allele bc1-2, bc1-1, cwa1, fp1, bc1-101
Chromosome No. 3
Explanation Culms and leaves are brittle and easy to be broken by bending. D47139, AY328909, AY328910. A2XHZ9(indica). Q10JL1(japonica). PO:0020104; leaf sheath ; PO:0009047; stem ; PO:0000077; sclerenchyma cell ; PO:0009049; inflorescence ; PO:0009015; vascular tissue ; PO:0020039; leaf lamina ; PO:0009005; root ; PO:0009025; leaf. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage.
Trait Class Vegetative organ - Culm
cDNA Accession No. AK069631
MSU ID LOC_Os03g30250.1
RAP ID Os03g0416200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Locate(cM) 108.0
Link map Classical linkage map
Peng S., Liu Y., Xu Y., Zhao J., Gao P., Liu Q., Yan S., Xiao Y., Zuo S.M., Kang H.
Int J Mol Sci 2023  24(14) 
Genome-Wide Association Study Identifies a Plant-Height-Associated Gene <i>OsPG3</i> in a Population of Commercial Rice Varieties.
Ning J., He W., Wu L., Chang L., Hu M., Fu Y., Liu F., Sun H., Gu P., Ndjiondjop M.N., Sun C., Zhu Z.
Plant Biotechnol. J. 2023  21(5)  931-942
The MYB transcription factor Seed Shattering 11 controls seed Shattering by repressing lignin synthesis in African rice.
Wu L., Zhang M., Zhang R., Yu H., Wang H., Li J., Wang Y., Hu Z., Wang Y., Luo Z., Li L., Wang L., Peng L., Xia T.
Biotechnol Biofuels 2021  14(1)  245
Down-regulation of OsMYB103L distinctively alters beta-1,4-glucan polymerization and cellulose microfibers assembly for enhanced biomass enzymatic saccharification in rice.
Liu S., Tang Y., Ruan N., Dang Z., Huang Y., Miao W., Xu Z., Li F.
Rice (N Y) 2020  13(1)  41
The Rice bz1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.
Wang D., Xu T., Yin Z., Wu W., Geng H., Li L., Yang M., Cai H., Lian X.
Front Plant Sci 2020  11  369
Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.
Wang B., Li J.
Plant Cell 2019  31(7)  1416-1417
Understanding the Molecular Bases of Agronomic Trait Improvement in Rice.
Ye Y., Liu B., Zhao M., Wu K., Cheng W., Chen X., Liu Q., Liu Z., Fu X., Wu Y.
Plant Mol. Biol. 2015  89(4-5)  385-401
CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.
Wu B., Zhang B., Dai Y., Zhang L., Shang-Guan K., Peng Y., Zhou Y., Zhu Z.
Plant Physiol. 2012  159(4)  1440-52
Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice.
Shen G., Cheng Zhu2, Du Q.
Electronic Journal of Biology 2010  6(3)  73-79
Genome-wide identification of PHYTOCHELATIN and PHYTOCH_SYNTH domain-containing PHYTOCHELATIN family from rice
Sindhu A,Langewisch T,Olek A,Multani DS,McCann MC,Vermerris W,Carpita NC,Johal G
Plant Physiol. 2007  145  1444-59
Maize Brittle stalk2 encodes a COBRA-like protein expressed in early organ development but required for tissue flexibility at maturity.
Li,Y., Qian,Q., Zhou,Y., Yan,M., Sun,L., Zhang,M., Fu,Z., Wang,Y., Han,B., Pang,X., Chen,M. and Li,J.
Plant Cell 2003  15(9)  2020-2031
BRITTLE CULM1, Which Encodes a COBRA-Like Protein, Affects the Mechanical Properties of Rice Plants
Qian, Q., Y.H. Li, D. Zeng, S. Teng, Z. Wang, X. Li, Z. Dong, N. Dai, L. Sun, and J. Li
Chin. Sci. Bull. 2001  46  2082-2085
Isolation and genetic characterization of a fragile plant mutant rice (Oryza sativa L).
Eguchi, T., M. Ashikari, A. Yoshimura and N. Iwata
Breeding Science 1998  48(Suppl. 1)  80
Loci of physiological and morphological characters on RFLP linkage map in rice.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1985  35(Suppl. 1)  204-205.
Linkage studies in rice.On the loci of some marker genes locating on the chromosome 5.
Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984    187-274.
Gene analysis and linkage map.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1979  29(Suppl. 2)  182-183.
Linkage studies in rice. New genes belonging to the 11th linkage group.
Iwata, N., T. Omura and H. Satoh
Japan. J. Breed. 1978  28(Suppl. 1)  170-171.
Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.
Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1977  27(Suppl. 1)  250-251.
Linkage studies in rice.Linkage groups for 6 genes newly described.
Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963  53(1)  72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
Nagao, S.
Adv. Genet. 1951  4  181-212.
Genic analysis and linkage relationship of characters in rice.
TextPresso Search Search textpresso for BC1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060068
Gene Ontology secondary cell wall biogenesis( GO:0009834 )
lignin metabolic process( GO:0009808 )
plasma membrane( GO:0005886 )
secondary cell wall( GO:0009531 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
anchored to membrane( GO:0031225 )
Trait Ontology leaf shattering( TO:0000108 )
node shattering( TO:0000061 )
stem strength( TO:0000051 )
Plant Ontology sclerenchyma cell( PO:0000077 )
root( PO:0009005 )
portion of vascular tissue( PO:0009015 )
leaf sheath( PO:0020104 )
vascular leaf( PO:0009025 )
stem( PO:0009047 )
inflorescence( PO:0009049 )
leaf lamina( PO:0020039 )
Related Strains
Stocks for Genes 1
F Lines 5
Backcross Fn Generation (T65) 6
Phenotype images
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Last updated
Nov 13, 2023