Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SBI
Gene Symbol Synonym GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4, OsSBI
CGSNL Gene Name SHORTENED BASAL INTERNODES
Gene Name Synonym rice GA 2-oxidase4, GA 2-oxidase 4, Gibberellin 2-oxidase 4
Protein Name GIBBERELLIN 2-OXIDASE 4
Allele SBISV14, SBIZhu1S
Chromosome No. 5
Explanation This gene encodes one of the GA metabolic enzymes, GA 2-oxidase (GA2ox), being located on chromosome 5 at 106cM. EU179387-EU179391 (wild rice species). MF574209 (SBISV14), MF574210 (SBIZhu1S). a semi-dominant gene.
Trait Class Biochemical character
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK107211
MSU ID LOC_Os05g43880.1
RAP ID Os05g0514600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Wang H., Chen M., Zhang D., Meng X., Yan J., Chu J., Li J., Yu H.
Plant Biotechnol. J. 2024  22(3)  532-534
Shaping rice Green Revolution traits by engineering ATG immediate upstream 5'-UTR sequences of OsSBI and OsHTD1.
Song J., Ga E., Park S., Lee H., Yoon I.S., Lee S.B., Lee J.Y., Kim B.G.
Int J Mol Sci 2023  24(13) 
PROTEIN PHOSPHATASE 2C08, a Negative Regulator of Abscisic Acid Signaling, Promotes Internode Elongation in Rice.
Prakash S., Rai R., Zamzam M., Ahmad O., Peesapati R., Vijayraghavan U.
Front Plant Sci 2022  13  865928
OsbZIP47 Is an Integrator for Meristem Regulators During Rice Plant Growth and Development.
Hsieh K.T., Chen Y.T., Hu T.J., Lin S.M., Hsieh C.H., Liu S.H., Shiue S.Y., Lo S.F., Wang I.W., Tseng C.S., Chen L.J.
Rice (N Y) 2021  14(1)  70
Comparisons within the Rice GA 2-Oxidase Gene Family Revealed Three Dominant Paralogs and a Functional Attenuated Gene that Led to the Identification of Four Amino Acid Variants Associated with GA Deactivation Capability.
Li R., Jiang M., Song Y., Zhang H.
Front Plant Sci 2021  12  727596
Melatonin Alleviates Low-Temperature Stress <i>via</i> ABI5-Mediated Signals During Seed Germination in Rice (<i>Oryza sativa</i> L.).
Wang Y., Du F., Wang J., Li Y., Zhang Y., Zhao X., Zheng T., Li Z., Xu J., Wang W., Fu B.
Int J Mol Sci 2021  22(17) 
Molecular Dissection of the Gene <i>OsGA2ox8</i> Conferring Osmotic Stress Tolerance in Rice.
Liu C., Zheng S., Gui J., Fu C., Yu H., Song D., Shen J., Qin P., Liu X., Han B., Yang Y., Li L.
Mol Plant 2018  11(2)  288-299
Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.
Zhou W., Malabanan P.B., Abrigo E.
Euphytica 2014  201  97-107
OsHox4 regulates GA signaling by interacting with DELLA-like genes and GA oxidase genes in rice
Hirose F., Inagaki N., Takano M.
Plant Signal Behav 2013  8(3) 
Differences and similarities in the photoregulation of gibberellin metabolism between rice and dicots.
Hirose F., Inagaki N., Hanada A., Yamaguchi S., Kamiya Y., Miyao A., Hirochika H., Takano M.
Plant Cell Physiol. 2012  53(9)  1570-82
Cryptochrome and Phytochrome Cooperatively but Independently Reduce Active Gibberellin Content in Rice Seedlings under Light Irradiation.
Yang,Y.H., Zhang,F.M. and Ge,S.
BMC Evol. Biol. 2009  9  206
Evolutionary rate patterns of the Gibberellin pathway genes
Sakamoto, T., K. Miura, H. Itoh, T. Tatsumi, M. Ueguchi-Tanaka, K. Ishiyama, M. Kobayashi, G.K. Agrawal, S. Takeda, K. Abe, A. Miyao, H. Hirochika, H. Kitano, M. Ashikari and M. Matsuoka
Plant Physiol. 2004  134  1642-1653
An overview of gibberellin metabolism enzyme genes and their related mutants in rice.
TextPresso Search Search textpresso for SBI ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0020080
Ontologies
Gene Ontology response to hormone stimulus( GO:0009725 )
response to cold( GO:0009409 )
gibberellin metabolic process( GO:0009685 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
secretion by cell( GO:0032940 )
internode patterning( GO:0080006 )
Trait Ontology lodging incidence( TO:0000068 )
plant height( TO:0000207 )
internode length( TO:0000145 )
cold tolerance( TO:0000303 )
plant growth hormone sensitivity( TO:0000401 )
Plant Ontology shoot internode( PO:0005005 )
stem( PO:0009047 )
Related Strains
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Phenotype images
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Last updated
May 15, 2024


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