Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PRL5
Gene Symbol Synonym OsGA20ox4, ga20ox4, GA20ox2, Prl5, Prl5/GA20ox4, OsPrl5
CGSNL Gene Name PANICLE RACHIS LENGTH 5
Gene Name Synonym rice GA 20-oxidase4, GA 20-oxidase 4, gibberellin C-20 oxidase 4, Putative gibberellin 20-dioxygenase 4, PANICLE RACHIS LENGTH5
Protein Name GIBBERELLIN 20-OXIDASE 4
Allele Prl5-ST-1
Chromosome No. 5
Explanation This gene encodes one of the GA metabolic enzymes, GA 20-oxidase (GA20ox), being located on chromosome 5 at 80.3cM. Putative gibberellin 20-dioxygenase. likely related to drought and salt stress(Whankaew et al. 2020). GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. CB660961. GA20ox2 in Yuan et al. 2019. GSE151043. TO:0000847: panicle inflorescence morphology trait. PO:0030123: panicle inflorescence. TO:0000784: inflorescence branch morphology trait. TO:0001065: panicle inflorescence terminal primary branch length.
Trait Class Biochemical character
Reproductive organ - Inflorescence
Reproductive organ - panicle
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os05g34854.1
LOC_Os05g34854.2
RAP ID Os05g0421900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Agata A., Ashikari M., Sato Y., Kitano H., Hobo T.
Breed. Sci. 2023  73(1)  86-94
Designing rice panicle architecture via developmental regulatory genes.
Song J., Ga E., Park S., Lee H., Yoon I.S., Lee S.B., Lee J.Y., Kim B.G.
Int J Mol Sci 2023  24(13) 
PROTEIN PHOSPHATASE 2C08, a Negative Regulator of Abscisic Acid Signaling, Promotes Internode Elongation in Rice.
Ma Z., Wu T., Huang K., Jin Y.M., Li Z., Chen M., Yun S., Zhang H., Yang X., Chen H., Bai H., Du L., Ju S., Guo L., Bian M., Hu L., Du X., Jiang W.
Front Plant Sci 2020  11  709
A Novel AP2/ERF Transcription Factor, OsRPH1, Negatively Regulates plant height in Rice.
Agata A., Ando K., Ota S., Kojima M., Takebayashi Y., Takehara S., Doi K., Ueguchi-Tanaka M., Suzuki T., Sakakibara H., Matsuoka M., Ashikari M., Inukai Y., Kitano H., Hobo T.
Commun Biol 2020  3(1)  302
Diverse panicle architecture results from various combinations of Prl5/GA20ox4 and Pbl6/APO1 alleles.
Whankaew S., Kaewmanee S., Ruttajorn K., Phongdara A.
Physiol Mol Biol Plants 2020  26(6)  1237-1247
Indel marker analysis of putative stress-related genes reveals genetic diversity and differentiation of rice landraces in peninsular Thailand.
Yuan S., Kim S.C., Deng X., Hong Y., Wang X.
New Phytol. 2019  223(1)  261-276
Diacylglycerol kinase and associated lipid mediators modulate rice root architecture.
Hirose F., Inagaki N., Takano M.
Plant Signal Behav 2013  8(3) 
Differences and similarities in the photoregulation of gibberellin metabolism between rice and dicots.
Hirose F., Inagaki N., Hanada A., Yamaguchi S., Kamiya Y., Miyao A., Hirochika H., Takano M.
Plant Cell Physiol. 2012  53(9)  1570-82
Cryptochrome and Phytochrome Cooperatively but Independently Reduce Active Gibberellin Content in Rice Seedlings under Light Irradiation.
Tang X., Zhang Z.-Y., Zhang W.-J., Zhao X.-M., Li X., Zhang D., Liu Q.-Q., Tang W.-H.
Plant Physiol. 2010  154(4)  1855-1870
Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis.
Yamaguchi S.
Annual Review of Plant Biology 2008  59  225-51
Gibberellin metabolism and its regulation.
Hirose,N., Makita,N., Kojima,M., Kamada-Nobusada,T. and Sakakibara,H.
Plant Cell Physiol. 2007  48(3)  523-539
Overexpression of a type-a response regulator alters rice morphology and cytokinin metabolism.
Sakamoto, T., K. Miura, H. Itoh, T. Tatsumi, M. Ueguchi-Tanaka, K. Ishiyama, M. Kobayashi, G.K. Agrawal, S. Takeda, K. Abe, A. Miyao, H. Hirochika, H. Kitano, M. Ashikari and M. Matsuoka
Plant Physiol. 2004  134  1642-1653
An overview of gibberellin metabolism enzyme genes and their related mutants in rice.
TextPresso Search Search textpresso for PRL5 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0020082
Ontologies
Gene Ontology proteolysis( GO:0006508 )
iron ion binding( GO:0005506 )
metallocarboxypeptidase activity( GO:0004181 )
antibiotic biosynthetic process( GO:0017000 )
oxidoreductase activity( GO:0016491 )
isopenicillin-N synthase activity( GO:0016216 )
gibberellin metabolic process( GO:0009685 )
Trait Ontology enzyme activity( TO:0000599 )
growth and development trait( TO:0000357 )
panicle length( TO:0000040 )
inflorescence branching( TO:0000050 )
filled grain number( TO:0000447 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Sep 14, 2023


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