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Basic Information
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CGSNL 遺伝子シンボル
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RD
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遺伝子シンボルシノニム
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Rd, DFR, OsDFR, OS-DFR, OsDFR1, DFR1, DFR-1
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CGSNL 遺伝子名
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RED PERICARP AND SEED COAT
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遺伝子名シノニム
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種皮赤色
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タンパク質名
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DIHYDROFLAVONOL-4-REDUCTASE
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対立遺伝子
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Rd1,Rd2
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染色体番号
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1
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解説
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Rcと共存すると、Rcの赤褐色の色を果皮全体に広げる。Rd自体は色素を作らない。Y07956. AB003495, AB003496, AB010744, AB010745. AF490387 (indica). GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. PO:0025616: lemma apiculus. TO:0001109: grain color trait.
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形質クラス
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生化学的性質
栄養器官 - 稈
着色 - アントシアニン
着色 - その他
種子
種子 - 形態学的な特色
耐性、抵抗性 - 病気抵抗性
耐性、抵抗性 - 害虫抵抗性
耐性、抵抗性 - ストレス耐性
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発現
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Sequence/Locus
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cDNA Accession No.
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AB003496
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MSU ID
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LOC_Os01g44260.1
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RAP ID
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Os01g0633500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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マップ
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位置情報(cM)
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65.0
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リンケージマップ
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Classical linkage map
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文献
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Mackon E., Jeazet Dongho Epse Mackon GC., Yao Y., Guo Y., Ma Y., Dai X., Jandan T.H., Liu P.
Front Plant Sci 2023 14 1211326
Integrative HPLC profiling and transcriptome analysis revealed insights into anthocyanin accumulation and key genes at three developmental stages of black rice (<i>Oryza sativa</i>. L) caryopsis.
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Zou T., Wang X., Sun T., Rong H., Wu L., Deng J., Guo T., Wang H., Wang J., Huang M.
Int J Mol Sci 2023 24(7)
MYB Transcription Factor <i>OsC1PLSr</i> Involves the Regulation of Purple leaf sheath in Rice.
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Lu Y., Xu Y., Li N.
Rice (N Y) 2022 15(1) 11
Early Domestication History of Asian Rice Revealed by Mutations and Genome-Wide Analysis of Gene Genealogies.
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Wang J., Zhang C., Li Y.
Genes (Basel) 2022 13(3)
Genome-Wide Identification and Expression Profiles of 13 Key Structural Gene Families Involved in the Biosynthesis of Rice Flavonoid Scaffolds.
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Meng L., Qi C., Wang C., Wang S., Zhou C., Ren Y., Cheng Z., Zhang X., Guo X., Zhao Z., Wang J., Lin Q., Zhu S., Wang H., Wang Z., Lei C., Wan J.
Rice (N Y) 2021 14(1) 37
Determinant Factors and Regulatory Systems for Anthocyanin Biosynthesis in Rice Apiculi and Stigmas.
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Kim D.H., Yang J., Ha S.H., Kim J.K., Lee J.Y., Lim S.H.
Front Plant Sci 2021 12 765049
An OsKala3, R2R3 MYB TF, Is a Common Key Player for Black Rice Pericarp as Main Partner of an OsKala4, bHLH TF.
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Yang X., Wang J., Xia X., Zhang Z., He J., Nong B., Luo T., Feng R., Wu Y., Pan Y., Xiong F., Zeng Y., Chen C., Guo H., Xu Z., Li D., Deng G.
Plant J. 2021 107(1) 198-214
OsTTG1, a WD40 repeat gene, regulates anthocyanin biosynthesis in rice.
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Mackon E., Ma Y., Jeazet Dongho Epse Mackon GC., Usman B., Zhao Y., Li Q., Liu P.
Genes (Basel) 2021 12(4)
Computational and Transcriptomic Analysis Unraveled <i>OsMATE34</i> as a Putative anthocyanin transporter in Black Rice (<i>Oryza sativa</i> L.) Caryopsis.
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Jan R., Khan M.A., Asaf S., Lee I.J., Kim K.M.
Sci Rep 2020 10(1) 14685
Overexpression of OsF3H modulates WBPH stress by alteration of phenylpropanoid pathway at a transcriptomic and metabolomic level in Oryza sativa.
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Zheng J., Wu H., Zhu H., Huang C., Liu C., Chang Y., Kong Z., Zhou Z., Wang G., Lin Y., Chen H.
New Phytol. 2019 223(2) 705-721
Determining factors, regulation system, and domestication of anthocyanin biosynthesis in rice leaves.
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Oshima M., Taniguchi Y., Akasaka M., Abe K., Ichikawa H., Tabei Y., Tanaka J.
Breed. Sci. 2019 69(2) 244-254
Development of a visible marker trait based on leaf sheath-specific anthocyanin pigmentation applicable to various genotypes in rice.
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Zaidi S.H.R., Zakari S.A., Zhao Q., Khan A.R., Shah J.M., Cheng F.
Antioxidants (Basel) 2019 8(11)
Anthocyanin Accumulation in Black Kernel Mutant Rice and its Contribution to ROS Detoxification in Response to High Temperature at the Filling Stage.
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Oikawa T., Maeda H., Oguchi T., Yamaguchi T., Tanabe N., Ebana K., Yano M., Ebitani T., Izawa T.
Plant Cell 2015 27(9) 2401-14
The Birth of a Black Rice Gene and Its Local Spread by Introgression.
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Chen X., Itani T., Wu X., Chikawa Y., Irifune K.
Plant Signal Behav 2013 8(12) e27555
Physiological factors affecting transcription of genes involved in the flavonoid biosynthetic pathway in different rice varieties.
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Konishi S,Ebana K,Izawa T
Plant Cell Physiol. 2008 49 1283-93
Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars.
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Shih CH, Chu H, Tang LK, Sakamoto W, Maekawa M, Chu IK, Wang M, Lo C.
Planta. 2008 228(6) 1043-54.
Functional characterization of key structural genes in rice flavonoid biosynthesis.
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Furukawa,T., Maekawa,M., Oki,T., Suda,I., Iida,S., Shimada,H., Takamure,I. and Kadowaki,K.I.
Plant J. 2007 49(1) 91-102
The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp.
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Yau,C.P., Zhuang,C.X., Zee,S.Y. and Yip,W.K.
Sex. Plant Reprod. 2005 18(2) 65-74
Expression of a microsporocyte-specific gene encoding dihydroflavonol 4-reductase-like protein is developmentally regulated during early microsporogenesis in rice
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Liu,W.D. and Wang,S.P.
Acta Genetica Sinica 2002 29(10) 875-879
Analysis and mapping of homologous sequences of barley disease resistance gene Mlo and maize disease resistance gene Hm1 in rice
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Nakai,K., Inagaki,Y., Nagata,H., Miyazaki,C. and Iida,S.
Plant Biotechnol. 1998 15(4) 221-225
Molecular characterization of the gene for dihydroflavonol 4-reductase of Japonica rice varieties
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Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984 187-274.
Gene analysis and linkage map.
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Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963 53(1) 72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
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Nagao, S.
Adv. Genet. 1951 4 181-212.
Genic analysis and linkage relationship of characters in rice.
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TextPresso Search
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Search textpresso for RD
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060733
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オントロジー
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Gene Ontology
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defense response to fungus( GO:0050832 )
cytoplasm( GO:0005737 )
nucleus( GO:0005634 )
defense response to insect( GO:0002213 )
coenzyme binding( GO:0050662 )
cellular metabolic process( GO:0044237 )
flavonoid metabolic process( GO:0009812 )
catalytic activity( GO:0003824 )
response to light stimulus( GO:0009416 )
flavonoid biosynthetic process( GO:0009813 )
proanthocyanidin biosynthetic process( GO:0010023 )
flavonol biosynthetic process( GO:0051555 )
pigmentation( GO:0043473 )
response to heat( GO:0009408 )
anthocyanin biosynthetic process( GO:0009718 )
seed development( GO:0048316 )
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Trait Ontology
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endosperm color( TO:0000487 )
seed color( TO:0000486 )
light sensitivity( TO:0000075 )
pericarp color( TO:0000707 )
seed coat color( TO:0000190 )
heat tolerance( TO:0000259 )
anthocyanin content( TO:0000071 )
seed development trait( TO:0000653 )
plant height( TO:0000207 )
white-backed planthopper resistance( TO:0000205 )
stigma color( TO:0000185 )
apiculus color( TO:0000140 )
hull color( TO:0000706 )
leaf color( TO:0000326 )
blast disease( TO:0000074 )
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Plant Ontology
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seed coat( PO:0009088 )
endosperm( PO:0009089 )
seed development stage( PO:0001170 )
stigma( PO:0009073 )
paleal apiculus( PO:0006033 )
whole plant fruit ripening stage( PO:0007010 )
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関連系統
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形質画像
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更新日
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2023-12-18 10:24:16.644
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更新情報
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