Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol RD
Gene Symbol Synonym Rd, DFR, OsDFR, OS-DFR
CGSNL Gene Name RED PERICARP AND SEED COAT
Gene Name Synonym Red pericarp and seed coat, dihydroflavonol 4-reductase, dihydroflavonol-4-reductase
Protein Name DIHYDROFLAVONOL-4-REDUCTASE
Allele Rd1,Rd2
Chromosome No. 1
Explanation Responsible for spreading the color of Rc, when Rc co-exists, giving a dark red pericarp and seed coat, or red rice. Rd itself does not produce any pigment. [298] PO:0009088; seed coat ; PO:0009089; endosperm. GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007045; 09-mature grain stage ; GRO:0007046; 07-milk stage. Y07956. AB003495, AB003496, AB010744, AB010745.
Trait Class Biochemical character
Coloration - Anthocyanin
Coloration - Others
Seed
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AB003496
MSU ID LOC_Os01g44260.1
RAP ID Os01g0633500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM) 65.0
Link map Classical linkage map
References
Oshima M., Taniguchi Y., Akasaka M., Abe K., Ichikawa H., Tabei Y., Tanaka J.
Breed. Sci. 2019  69(2)  244-254
Development of a visible marker trait based on leaf sheath-specific anthocyanin pigmentation applicable to various genotypes in rice.
Oikawa T., Maeda H., Oguchi T., Yamaguchi T., Tanabe N., Ebana K., Yano M., Ebitani T., Izawa T.
Plant Cell 2015  27(9)  2401-14
The Birth of a Black Rice Gene and Its Local Spread by Introgression.
Chen X., Itani T., Wu X., Chikawa Y., Irifune K.
Plant Signal Behav 2013  8(12)  e27555
Physiological factors affecting transcription of genes involved in the flavonoid biosynthetic pathway in different rice varieties.
Shih CH, Chu H, Tang LK, Sakamoto W, Maekawa M, Chu IK, Wang M, Lo C.
Planta. 2008  228(6)  1043-54.
Functional characterization of key structural genes in rice flavonoid biosynthesis.
Konishi S,Ebana K,Izawa T
Plant Cell Physiol. 2008  49  1283-93
Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars.
Furukawa,T., Maekawa,M., Oki,T., Suda,I., Iida,S., Shimada,H., Takamure,I. and Kadowaki,K.I.
Plant J. 2007  49(1)  91-102
The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp.
Yau,C.P., Zhuang,C.X., Zee,S.Y. and Yip,W.K.
Sex. Plant Reprod. 2005  18(2)  65-74
Expression of a microsporocyte-specific gene encoding dihydroflavonol 4-reductase-like protein is developmentally regulated during early microsporogenesis in rice
Nakai,K., Inagaki,Y., Nagata,H., Miyazaki,C. and Iida,S.
Plant Biotechnol. 1998  15(4)  221-225
Molecular characterization of the gene for dihydroflavonol 4-reductase of Japonica rice varieties
Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984    187-274.
Gene analysis and linkage map.
Nagao, S. and M. Takahashi
J. Fac. Agr. Hokkaido Univ. 1963  53(1)  72-130.
Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).
Nagao, S.
Adv. Genet. 1951  4  181-212.
Genic analysis and linkage relationship of characters in rice.
TextPresso Search Search textpresso for RD ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060733
Ontologies
Gene Ontology pigmentation( GO:0043473 )
flavonoid metabolic process( GO:0009812 )
catalytic activity( GO:0003824 )
response to light stimulus( GO:0009416 )
flavonoid biosynthetic process( GO:0009813 )
proanthocyanidin biosynthetic process( GO:0010023 )
cellular metabolic process( GO:0044237 )
coenzyme binding( GO:0050662 )
flavonol biosynthetic process( GO:0051555 )
Trait Ontology endosperm color( TO:0000487 )
seed color( TO:0000486 )
light sensitivity( TO:0000075 )
pericarp color( TO:0000707 )
seed coat color( TO:0000190 )
Plant Ontology seed coat( PO:0009088 )
endosperm( PO:0009089 )
Related Strains
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Phenotype images
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Last updated
Jan 16, 2020


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