遺伝子 - 詳細

詳細 - 遺伝子

Basic Information

CGSNL 遺伝子シンボル

D18

遺伝子シンボルシノニム

d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1

CGSNL 遺伝子名

DWARF 18

遺伝子名シノニム

豊雪矮性Housetsu-waisei(d18-h), あきばれ矮性Akibare waisei(d18-AD), 矮稲Waito-C(d18-dy),小丈玉錦Kotaketamanishiki(d18-k), GA 3beta-hydroxylase2, GA 3beta-hydroxylase 2, GA 3-oxidase 2, Gibberellin(GA)-3 beta-hydroxylase-2

タンパク質名

GIBBERELLIN 3BETA-HYDROXYLASE 2

対立遺伝子

d18-h, d18-AD, d18-dy, d18-k

染色体番号

解説

d18-h(d18 のアレルの一つ。草丈は約15cm程度で極矮性。葉は固く濃緑色。籾の大きさや形はほぼ正常。ジベレリンに対する反応性が大きい。). d18-kは小丈玉錦の和名で呼ばれる。わい性の多面発現的効果による花粉形成期の耐冷性を示す。ジベレリン合成酵素の最終段階を司るOsGA3ox2遺伝子座の変異遺伝子。PO:0009047; stem ; PO:0009049; inflorescence ; PO:0009025; leaf. GRO:0007048; 04-stem elongation stage ; GRO:0007044; 06-heading stage ; GRO:0007045; 09-mature grain stage. この遺伝子はジベレリン合成の過程を支配する。この過程の欠陥はイネの矮性を引き起こす。この遺伝子は、染色体1の短腕末端にある D18 の位置にあり、d18 矮性に係わっている。GA 3beta-hydroxylase, Putative 3b-hydroxylase. PO:0000003; whole plant ; PO:0009046; flower. EU179398-EU179402 (wild rice species). GA3ox1 in Zhao et al. 2016, Nie et al. 2022.

形質クラス

生化学的性質
栄養器官 - 稈
耐性、抵抗性 - ストレス耐性

発現

Sequence/Locus

cDNA Accession No.

AB056518

MSU ID

LOC_Os01g08220.1

RAP ID

Os01g0177400

Links

Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )

INSD Accession List
(Test version)

マップ

位置情報(cM)

リンケージマップ

Classical linkage map

文献

Huang Y., Song J., Hao Q., Mou C., Wu H., Zhang F., Zhu Z., Wang P., Ma T., Fu K., Chen Y., Nguyen T., Liu S., Jiang L., Wan J.
Plant Physiol. Biochem. 2023 202 107923

WEAK seed dormancy 1, an aminotransferase protein, regulates seed dormancy in rice through the GA and ABA pathways.

Zhang Y., Gan L., Zhang Y., Huang B., Wan B., Li J., Tong L., Zhou X., Wei Z., Li Y., Song Z., Zhang X., Cai D., He Y.
Plant J. 2023

OsCBL5-CIPK1-pp23 module enhances rice grain size and weight through the gibberellin pathway.

Huang Y., Li J., Huang Q.
Sci Rep 2022 12(1) 17847

Physiologic and molecular responses of indica-japonica subspecies tetraploid rice seed germination to ion beams.

Nie L., Song S., Yin Q., Zhao T., Liu H., He A., Wang W.
Rice (N Y) 2022 15(1) 19

Enhancement in Seed Priming-Induced Starch Degradation of Rice Seed Under Chilling Stress via GA-Mediated alpha-amylase Expression.

Yachun Y., Juan L., Hao L., Zuntao X., Ruiying Q., Wenge W., Pengcheng W., Yong D., Jianbo Y.
Rice Science 2021 28(4) 313-316

SDF5 Encoding P450 Protein Is Required for Internode Elongation in Rice

Hsieh K.T., Chen Y.T., Hu T.J., Lin S.M., Hsieh C.H., Liu S.H., Shiue S.Y., Lo S.F., Wang I.W., Tseng C.S., Chen L.J.
Rice (N Y) 2021 14(1) 70

Comparisons within the Rice GA 2-Oxidase Gene Family Revealed Three Dominant Paralogs and a Functional Attenuated Gene that Led to the Identification of Four Amino Acid Variants Associated with GA Deactivation Capability.

Ma Z., Wu T., Huang K., Jin Y.M., Li Z., Chen M., Yun S., Zhang H., Yang X., Chen H., Bai H., Du L., Ju S., Guo L., Bian M., Hu L., Du X., Jiang W.
Front Plant Sci 2020 11 709

A Novel AP2/ERF Transcription Factor, OsRPH1, Negatively Regulates plant height in Rice.

Tang Y., Liu H., Guo S., Wang B., Li Z., Chong K., Xu Y.
Plant Physiol. 2018 176(1) 946-959

OsmiR396d Affects Gibberellin and Brassinosteroid Signaling to Regulate Plant Architecture in Rice.

Liu L., Xia W., Li H., Zeng H., Wei B., Han S., Yin C.
Front Plant Sci 2018 9 275

Salinity Inhibits Rice Seed Germination by Reducing alpha-amylase Activity via Decreased Bioactive Gibberellin Content.

Xie Y., Zhang Y., Han J., Luo J., Li G., Huang J., Wu H., Tian Q., Zhu Q., Chen Y., Kawano Y., Liu Y.G., Chen L.
Mol Plant 2018 11(5) 720-735

The Intronic cis Element SE1 Recruits trans-Acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.

Xiao Y., Liu D., Zhang G., Tong H., Chu C.
Front Plant Sci 2017 8 1698

Brassinosteroids Regulate OFP1, a DLT interacting protein, to Modulate Plant Architecture and Grain Morphology in Rice.

Wang J., Wang R., Wang Y., Zhang L., Zhang L., Xu Y., Yao S.
Plant J. 2017

SHORT and Solid Culm/RFL/APO2 for culm development in rice.

Li C., Liu Y., Shen W.H., Yu Y., Dong A.
J Integr Plant Biol 2017

Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.

Tong H., Chu C.
Plant Cell 2016 28(4) 833-5

Reply: Brassinosteroid Regulates Gibberellin Synthesis to Promote Cell Elongation in Rice: Critical Comments on Ross and Quittenden's Letter.

Zhao J., Li M., Gu D., Liu X., Zhang J., Wu K., Zhang X., Teixeira da Silva JA., Duan J.
Biochem. Biophys. Res. Commun. 2016 470(2) 439-44

Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.

El-Kereamy A., Bi Y.M., Mahmood K., Ranathunge K., Yaish M.W., Nambara E., Rothstein S.J.
Front Plant Sci 2015 6 934

Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.

Zhou W., Malabanan P.B., Abrigo E.
Euphytica 2014 201 97-107

OsHox4 regulates GA signaling by interacting with DELLA-like genes and GA oxidase genes in rice

Tong H.a, Xiao Y.a, Liu D.a, Gao S.a, Liu L.a, Yin Y.b, Jin Y.c, Qian Q.d, Chu C.a
Plant Cell 2014 26 4376-4393

Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in ricec w open

Guo X., Hou X., Fang J., Wei P., Xu B., Chen M., Feng Y., Chu C.
Plant J. 2013 75(3) 403-16

The rice GERMINATION DEFECTIVE1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.

Tang X., Zhang Z.-Y., Zhang W.-J., Zhao X.-M., Li X., Zhang D., Liu Q.-Q., Tang W.-H.
Plant Physiol. 2010 154(4) 1855-1870

Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis.

Yang,Y.H., Zhang,F.M. and Ge,S.
BMC Evol. Biol. 2009 9 206

Evolutionary rate patterns of the Gibberellin pathway genes

Yamaguchi S.
Annual Review of Plant Biology 2008 59 225-51

Gibberellin metabolism and its regulation.

Dai M, Zhao Y, Ma Q, Hu Y, Hedden P, Zhang Q, Zhou DX.
Plant Physiol. 2007 144(1) 121-33

The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism.

Sakamoto, T., K. Miura, H. Itoh, T. Tatsumi, M. Ueguchi-Tanaka, K. Ishiyama, M. Kobayashi, G.K. Agrawal, S. Takeda, K. Abe, A. Miyao, H. Hirochika, H. Kitano, M. Ashikari and M. Matsuoka
Plant Physiol. 2004 134 1642-1653

An overview of gibberellin metabolism enzyme genes and their related mutants in rice.

Murai, M., H. Bahadur KC, T. Yoshida
Breeding Science 2003 53 237-244

Effect of the dwarfing gene d18-k on cool tolerance at booting stage under the genetic background of an extremely cool-tolerant rice line Norin-PL11, and its relation with water depth.

Kaneko, M., H. Itoh, Y. Inukai, T. Sakamoto, M. Ueguchi-Tanaka, M. Ashikari and M. Matsuoka
Plant J. 2003 35 (1) 104-115

Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants?

Itoh, H., M. Ueguchi-Tanaka, T. Sakamoto, T. Kayano, H. Tanaka, M. Ashikari and M. Matsuoka
Breeding Science 2002 52 215-218

Modification of rice plant height by suppressing the height-controlling gene, D18, in rice.

Itoh,H., Ueguchi-Tanaka,M., Sentoku,N., Kitano,H., Matsuoka,M. and Kobayashi,M.
Proc. Natl. Acad. Sci. U.S.A. 2001 98(15) 8909-8914

Cloning and functional analysis of two gibberellin 3 beta -hydroxylase genes that are differently expressed during the growth of rice.

Murai, M., N. Shinbashi, S. Sato, K. Sato, H. Araki and M. Ehara
Breeding Science 1995 45 7-14.

Effect of dwarfing gene from Dee-geo-woo-gen on culm and internode lengths, and its response to fertilizer in rice.

Murai, M., S. Hirose, S. Sato
Japan. J. Breed. 1992 42 811-823

Effect of the dwarfing gene from Dee-geo-woo-gen and others on cool temperature tolerance at flowering stage in rice.

Murai, M., S. Hirose, N. Suzuki, M. Yamane, S. Sato
Japan. J. Breed. 1992 42 91-102

Effects of the dwarfing gene from Dee-geo-woo-gen and three others on high temperature tolerance at flowering.

Yoshimura, A., O. Ideta, T. Matsumoto, T. Tsunematsu and N. Iwata
Japan. J. Breed. 1992 42(Suppl. 1) 168-169.

Integration of conventional and RFLP linkage maps in rice. 1. On chromosomes 1, 2, 3 and 4.

Murai, M., S. Hirose, A. Kusutani, N. Shinbashi, Y. Nishikawa
Japan. J. Breed. 1991 41 581-593

Relation between cool temperature damage at booting stage and water depth in dwarf lines of rice.

Murai, M., S. Hirose, S. Sato, M. Takeda
Japan. J. Breed. 1991 41 241-254

Effects of dwarfing genes from Dee-geo-woo-gen and other varieties on cool temperature tolerance at booting stage in rice.

Iwata, N.
Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research). 1990 10-19.

Exploitation and identification on chloroplast mutants.

Suge, H.
Japan. J. Breed. 1990 40(1) 21-31.

Survey of endogenous gibberellins in rice lines having different dwarfing genes and in autoteraploid lines.

Iwata, N., H. Satoh and A. Yoshimura
Bull. Inst. Trop. Agr. Kyushu Univ. 1989 12 1-9.

Linkage studies in rice (Oryza sativa L.). Linkage map of chromosome 3.

Iwata, N. and T. Omura
Jpn. J. Genet. 1984 59(3) 199-204.

Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.

Kinoshita, T.
In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo. 1984 187-274.

Gene analysis and linkage map.

Yoshimura, A., N. Iwata and T. Omura
Japan. J. Breed. 1982 32(4) 323-332.

Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L.). III. Marker genes located on chromosomes 2, 3, 4 and 7.

Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1979 29(Suppl. 1) 234-235.

Linkage studies in rice. On some genes described newly which belonging to the third linkage group.

Shinbashi, N., T. Kinoshita, M. Takahashi and K. Hasebe
Mem. Fac. Agr. Hokkaido Univ. 1976 10(1) 69-75.

Genetic aspects of two dwarfs Hosetsu-dwarf and Kotake-tamanishiki, and their character expressions.-Genetical studies on rice plant. LXVI-.

Kinoshita, T., M. Takahashi, K. Mori and N. Shinbashi
Res. Bull. Univ. Farm Hokkaido Univ. 1974 19 64-75.

Character expression and inheritance mode of three kinds of dwarf rice. -Genetical studies on rice plant, LXI-.

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DB Reference

Gramene ID

GR:0020076,GR0061382

オントロジー

Gene Ontology

response to ionizing radiation( GO:0010212 )
response to salt stress( GO:0009651 )
response to cold( GO:0009409 )
multicellular organismal development( GO:0007275 )
response to abiotic stimulus( GO:0009628 )
gibberellin metabolic process( GO:0009685 )
gibberellin biosynthetic process( GO:0009686 )
unidimensional cell growth( GO:0009826 )
gibberellin 3-beta-dioxygenase activity( GO:0016707 )
hormone biosynthetic process( GO:0042446 )
response to brassinosteroid stimulus( GO:0009741 )
brassinosteroid mediated signaling( GO:0009742 )

Trait Ontology

flower anatomy and morphology trait( TO:0000499 )
leaf shape( TO:0000492 )
leaf lamina color( TO:0000299 )
plant height( TO:0000207 )
panicle length( TO:0000040 )
stem length( TO:0000576 )
gibberellic acid content( TO:0002675 )
gibberellic acid sensitivity( TO:0000166 )
brassinosteroid sensitivity( TO:0002677 )
plant growth hormone sensitivity( TO:0000401 )
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 )
radiation response trait( TO:0000161 )

Plant Ontology

vascular leaf( PO:0009025 )
flower( PO:0009046 )
whole plant( PO:0000003 )
stem( PO:0009047 )
inflorescence( PO:0009049 )

Rice Database Oryzabase

遺伝子 - 詳細

詳細 - 遺伝子