Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol AMY1B
Gene Symbol Synonym Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c
CGSNL Gene Name ALPHA-AMYLASE 1B
Gene Name Synonym Alpha-amylase1B, Alpha-amylase isozyme C, Alpha-amylase isozyme 1B, Alpha-amylase-1B, Amylase-2, ALPHA-AMYLASE 1-3, alpha-amylase c, high PI alpha amylase
Protein Name ALPHA-AMYLASE 1B
Allele
Chromosome No. 1
Explanation EC=3.2.1.1 1,4-alpha-D-glucan glucanohydrolase. A2WPU3(indica). Q0JMV4(japonica). M59350. X52240. D10417 (partial cds).
Trait Class Biochemical character
Expression
Sequence/Locus
cDNA Accession No. AK063489
MSU ID LOC_Os01g25510.1
RAP ID Os01g0357400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Hwang YS, Thomas BR, Rodriguez RL.
Plant Mol. Biol. 1999  40(6)  911-920
Differential expression of rice alpha-amylase genes during seedling development under anoxia.
Chen,X., Chang,M., Wang,B. and Wu,B.
Plant J. 1997  11(3)  363-371
Cloning of a Ca(2+)-ATPase gene and the role of cytosolic Ca2+ in the gibberellin-dependent signaling pathway in aleurone cells.
Sheu JJ, Yu TS, Tong WF, Yu SM.
J. Biol. Chem. 1996  271(43)  26998-7004
Carbohydrate starvation stimulates differential expression of rice alpha-amylase genes that is modulated through complicated transcriptional and posttranscriptional processes.
Chen,X., Wang,B. and Wu,R.
Plant Mol. Biol. 1995  29(4)  787-795
A gibberellin-stimulated ubiquitin-conjugating enzyme gene is involved in alpha-amylase gene expression in rice aleurone.
Parco, A., G. Magpantay, G. Second, R. Rodriguez and N. Huang
RGN 1994  11  137-140.
Restriction fragment length polymorphism and linkage analysis of rice alpha-amylase gene family.
Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994  138  1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
Tanida I, Kim JK, Wu R.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 1994  244(2)  127-134
Functional dissection of a rice high-pI alpha-amylase gene promoter.
Uchimiya,H., Kidou,S., Shimazaki,T., Aotsuka,S., Takamatsu,S., Nishi,R., Hashimoto,H., Matsubayashi,Y., Kidou,N., Umeda,M. and Kato,A.
Plant J. 1992  2(6)  1005-1009
Random sequencing og cDNA librariesreveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.)
Kim,J.K. and Wu,R.
Plant Mol. Biol. 1992  18(2)  399-402
Nucleotide sequence of a high-pI rice (Oryza sativa) -amylase gene.
Kim,J.K., Cao,J. and Wu,R.
Mol. Gen. Genet. 1992  232(3)  383-393
Regulation and interaction of multiple protein factors with the proximal promoter regions of a rice high pI alpha-amylase gene.
Rodriguez, R.L., N. Huang, T. Sutliff, S. Ranjhan, E. Karrer and J. Litts
Rice Genetics. II. IRRI, Manila, Philippines. 1991    417-429.
Organization, structure and expression of the alpha-amylase multigene family.
Ranjhan, S., J.C. Litts, M.R. Foolad and R.L. Rodriguez
Theor. Appl. Genet. 1991  82  481-488.
Chromosomal localization and genomic organization of alpha-amylase genes in rice (Oryza sativa L.).
Huang,N., Sutliff,T.D., Litts,J.C. and Rodriguez,R.L.
Plant Mol. Biol. 1990  14(5)  655-668
Classification and characterization of the rice alpha-amylase multigene family.
Huang,N., Koizumi,N., Reinl,S. and Rodriguez,R.L.
Nucleic Acids Res. 1990  18(23)  7007-7014
Structural organization and differential expression of rice alpha-amylase genes.
DB Reference
Gramene ID GR:0060044
Ontologies
Gene Ontology alpha-amylase activity( GO:0004556 )
carbohydrate metabolic process( GO:0005975 )
calcium ion binding( GO:0005509 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Aug 7, 2014

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