Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | HAP3B |
| Gene Symbol Synonym | OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C |
| CGSNL Gene Name | HAP3B SUBUNIT OF CCAAT-BOX BINDING COMPLEX |
| Gene Name Synonym | rice HAP3B, Nuclear transcription factor Y subunit B-3, Transcriptional activator HAP3B, NUCLEAR FACTOR-Y subunit B4, NUCLEAR FACTOR-Y subunit NF-YB4, NF-YB subunit 4, NF-YB family 4 |
| Protein Name | HAP3B SUBUNIT OF CCAAT-BOX BINDING COMPLEX |
| Allele | |
| Chromosome No. | 5 |
| Explanation | This gene regulates chloroplast biogenesis. AB095439. NF-YB, CBF-A. Q60EQ4. LOC_Os05g49780. NF-YB4 (HAP3C) in Petroni et al. 2012 and Yang et al. 2017. OsHAP3C in Li et al. 2016. |
| Trait Class |
Vegetative organ - Leaf
Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK100811
CT837975 |
| MSU ID |
LOC_Os05g49780.1
|
| RAP ID |
Os05g0573500 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
Link to INSD Accession List |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
|
Yanga W., Lub Z., Xionga Y., Yaoa J.
The Crop Journal 2017 5(1) 21-31 Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice
|
|
|
Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.
J. Exp. Bot. 2016 67(6) 1759-68 Duplication of OsHAP family genes and their association with heading date in rice.
|
|
|
Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.
Plant Cell 2012 24(12) 4777-92 The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.
|
|
|
Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.
Mol. Genet. Genomics 2008 279(3) 279-289 Identification, characterization and interaction of HAP family genes in rice
|
|
|
Miyoshi,K., Ito,Y., Serizawa,A. and Kurata,N.
Plant J. 2003 36(4) 532-540 OsHAP3 genes regulate chloroplast biogenesis in rice.
|
|
| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
nucleus( GO:0005634 )
transcription( GO:0006350 ) regulation of transcription, DNA-dependent( GO:0006355 ) chloroplast organization( GO:0009658 ) sequence-specific DNA binding( GO:0043565 ) |
| Trait Ontology |
chloroplast development trait( TO:0002715 )
|
| Plant Ontology | - |
| Related Strains | |
| - | |
| Phenotype images | |
| - | |
| Last updated | |
| Dec 13, 2017 | |
