Update info.Gene - Detail
Detail of Gene
Click here for feedback| Basic Information | |
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| CGSNL Gene Symbol | HBD2 |
| Gene Symbol Synonym | OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1, LSES1, OsLSES1 |
| CGSNL Gene Name | HYBRID BREAKDOWN 2 |
| Gene Name Synonym | hybrid breakdown 2, rice casein Kinase I, casein kinase I, casein kinase I1, Low Temperature Growth 1, low-temperature response protein kinase 1, leaf starch excess and senescence 1 |
| Protein Name | CASEIN KINASE I |
| Allele | OsCKI1-1, OsCKI1-2, ltg1, lses1, osckI1 |
| Chromosome No. | 2 |
| Explanation | The homozygotes show abnormal root development, including fewer lateral and adventitious roots, and shorten primary roots as a result of reduced cell elongation. AJ487966. PO:0009005; root ; PO:0020125; elongation zone. GRO:0007047; 02-seedling ; GRO:0007043; 01-germination ; GRO:0007059; 2.01-first leaf through coleoptile. The gene on chromosome 2, designated hybrid breakdown 2 (hbd2), was mapped between simple sequence repeat markers RM3515 and RM3730. GO:0060918: auxin transport. NCBI SRA database with accession number PRJNA757395. ProteomeX- change database with accession number PXD030669. |
| Trait Class |
Biochemical character
Vegetative organ - Leaf Vegetative organ - Root Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness Tolerance and resistance - Stress tolerance |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK101388
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| MSU ID |
LOC_Os02g40860.1
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| RAP ID |
Os02g0622100 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
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INSD Accession List (Test version) |
Link to INSD Accession List |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Chen Z., Wang Y., Huang R., Zhang Z., Huang J., Yu F., Lin Y., Guo Y., Liang K., Zhou Y., Chen F.
BMC Plant Biol. 2022 22(1) 137 Integration of transcriptomic and proteomic analyses reveals several levels of metabolic regulation in the excess starch and early senescent leaf mutant LSES1 in rice.
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Lu G., Wu F.Q., Wu W., Wang H.J., Zheng X.M., Zhang Y., Chen X., Zhou K., Jin M., Cheng Z., Li X., Jiang L., Wang H., Wan J.
Plant J. 2014 78(3) 468-80 Rice ltg1 is involved in adaptive growth and fitness under low ambient temperature.
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Liu W.a, Ji S.b, Fang X.a c, Wang Q.a, Li Z.a, Yao F.a, Hou L.a, Dai S.b
J. Plant Growth Regul. 2013 32 483-490 Protein Kinase LTRPK1 Influences Cold Adaptation and Microtubule Stability in Rice
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Yamamoto E., Takashi T., Morinaka Y., Lin S., Wu J., Matsumoto T., Kitano H., Matsuoka M., Ashikari M.
Mol. Genet. Genomics 2010 283(4) 305-15 Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice.
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Yamamoto E,Takashi T,Morinaka Y,Lin S,Kitano H,Matsuoka M,Ashikari M
Theor. Appl. Genet. 2007 115 187-94 Interaction of two recessive genes, hbd2 and hbd3, induces hybrid breakdown in rice.
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Matsubara K,Ando T,Mizubayashi T,Ito S,Yano M
Theor. Appl. Genet. 2007 115 179-86 Identification and linkage mapping of complementary recessive genes causing hybrid breakdown in an intraspecific rice cross.
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Duan,K., Li,L., Hu,P., Xu,S.P., Xu,Z.H. and Xue,H.W.
Plant J. 2006 47(4) 519-531 A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling.
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Liu,W., Xu,Z.H., Luo,D. and Xue,H.W.
Plant J. 2003 36(2) 189-202 Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity.
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| TextPresso Search | Search textpresso for HBD2 ( Recent references may be retrievable, but without any warranty ) |
| DB Reference | |
| Gramene ID | GR:0080020 |
| Ontologies | |
| Gene Ontology |
starch catabolic process( GO:0005983 )
regulation of apoptosis( GO:0042981 ) starch metabolic process( GO:0005982 ) carbohydrate metabolic process( GO:0005975 ) abscisic acid mediated signaling( GO:0009738 ) leaf senescence( GO:0010150 ) protein kinase activity( GO:0004672 ) protein serine/threonine kinase activity( GO:0004674 ) protein tyrosine kinase activity( GO:0004713 ) nucleus( GO:0005634 ) protein amino acid phosphorylation( GO:0006468 ) response to brassinosteroid stimulus( GO:0009741 ) root development( GO:0048364 ) ATP binding( GO:0005524 ) multicellular organismal development( GO:0007275 ) unidimensional cell growth( GO:0009826 ) auxin metabolic process( GO:0009850 ) response to cold( GO:0009409 ) auxin biosynthetic process( GO:0009851 ) microtubule cytoskeleton organization( GO:0000226 ) cold acclimation( GO:0009631 ) |
| Trait Ontology |
root branching( TO:0000257 )
auxin sensitivity( TO:0000163 ) root development trait( TO:0000656 ) root number( TO:0000084 ) leaf angle( TO:0000206 ) abscisic acid sensitivity( TO:0000615 ) cold tolerance( TO:0000303 ) auxin content( TO:0002672 ) plant growth hormone sensitivity( TO:0000401 ) root length( TO:0000227 ) starch content( TO:0000696 ) leaf senescence( TO:0000249 ) leaf color( TO:0000326 ) chlorophyll content( TO:0000495 ) chlorophyll-a content( TO:0000293 ) chlorophyll-b content( TO:0000295 ) hydrogen peroxide content( TO:0000605 ) |
| Plant Ontology |
root( PO:0009005 )
elongation zone( PO:0020125 ) 4 leaf senescence stage( PO:0001054 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Aug 24, 2022 | |
