Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol SHR1
Gene Symbol Synonym OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38, DLN189, OsDLN189, OsSHR, SHR
Gene Name Synonym rice SHORT ROOT gene1, SHORT-ROOT 1, SHORTROOT1, SHORT-ROOT protein 1, GRAS protein 38, DLN repressor 189, DLN motif protein 189
Allele c-osshr1-1, c-osshr1-2
Chromosome No. 7
Explanation OsSHR and OsSCR genes work co-operatively for formation of root endodermis and leaf stomata of rice. A2YN56(indica), Q8H2X8(japonica). ZmSHR2 (GRMZM2G172657) and ZmSHR2h (GRMZM2G019060) are orthologous to OsSHR1 (Os07g39820) (Schuler et al. 2018). GO:2000280: regulation of root development.
Trait Class Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK120959
MSU ID LOC_Os07g39820.1
RAP ID Os07g0586900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Dutta M., Saha A., Moin M., Kirti P.B.
Front Plant Sci 2021  12  777285
Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS transcription factor Genes in Rice.
Zhao N., Zhang K., Wang C., Yan H., Liu Y., Xu W., Su Z.
Front Genet 2020  11  766
Systematic Analysis of Differential H3K27me3 and H3K4me3 Deposition in Callus and Seedling Reveals the Epigenetic Regulatory Mechanisms Involved in Callus Formation in Rice.
Lin Q., Zhang Z., Wu F., Feng M., Sun Y., Chen W., Cheng Z., Zhang X., Ren Y., Lei C., Zhu S., Wang J., Zhao Z., Guo X., Wang H., Wan J.
Plant Cell 2020  32(6)  1973-1987
The APC/CTE E3 Ubiquitin ligase Complex Mediates the Antagonistic Regulation of Root Growth and Tillering by ABA and GA.
Wu Z., Chen L., Yu Q., Zhou W., Gou X., Li J., Hou S.
New Phytol. 2019  223(1)  220-232
Multiple transcriptional factors control stomata development in rice.
Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019  20(7) 
Analysis of Rice Proteins with DLN repressor Motif/S.
Schuler M.L., Sedelnikova O.V., Walker B.J., Westhoff P., Langdale J.A.
Plant Physiol. 2018  176(1)  757-772
SHORTROOT-Mediated Increase in Stomatal Density Has No Impact on Photosynthetic Efficiency.
Hirano K., Yoshida H., Aya K., Kawamura M., Hayashi M., Hobo T., Sato-Izawa K., Kitano H., Ueguchi-Tanaka M., Matsuoka M.
Mol Plant 2017  10(4)  590-604
SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING Form a Complex to Integrate Auxin and Brassinosteroid Signaling in Rice.
Wu S., Lee C.M., Hayashi T., Price S., Divol F., Henry S., Pauluzzi G., Perin C., Gallagher K.L.
Proc. Natl. Acad. Sci. U.S.A. 2014   
A plausible mechanism, based upon SHORT-ROOT movement, for regulating the number of cortex cell layers in roots.
Cui H,Levesque MP,Vernoux T,Jung JW,Paquette AJ,Gallagher KL,Wang JY,Blilou I,Scheres B,Benfey PN
Science 2007  316  421-5
An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants.
Tian C, Wan P, Sun S, Li J, Chen M.
Plant Mol. Biol. 2004  54  519-532
Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
Kamiya,N., Itoh,J., Morikami,A., Nagato,Y. and Matsuoka,M.
Plant J. 2003  36(1)  45-54
The SCARECROW gene's role in asymmetric cell divisions in rice plants.
TextPresso Search Search textpresso for SHR1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to salt stress( GO:0009651 )
defense response to fungus( GO:0050832 )
maintenance of root meristem identity( GO:0010078 )
regulation of root meristem growth( GO:0010082 )
meristem maintenance( GO:0010073 )
gibberellic acid mediated signaling( GO:0009740 )
abscisic acid mediated signaling( GO:0009738 )
response to gibberellin stimulus( GO:0009739 )
response to abscisic acid stimulus( GO:0009737 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
multicellular organismal development( GO:0007275 )
regulation of transcription( GO:0045449 )
root development( GO:0048364 )
stomatal complex development( GO:0010374 )
Trait Ontology root development trait( TO:0000656 )
stomatal frequency( TO:0000566 )
abscisic acid sensitivity( TO:0000615 )
gibberellic acid sensitivity( TO:0000166 )
root meristem development( TO:0002692 )
tillering ability( TO:0000329 )
root length( TO:0000227 )
plant height( TO:0000207 )
sheath blight disease resistance( TO:0000255 )
salt tolerance( TO:0006001 )
Plant Ontology root cortex( PO:0000258 )
root development stage( PO:0007520 )
root meristem( PO:0006085 )
root( PO:0009005 )
Related Strains
Phenotype images
Last updated
Jun 2, 2022