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Basic Information
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CGSNL Gene Symbol
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SD1
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Gene Symbol Synonym
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sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2, OsPHQ1, OsPHq1, PHq1
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CGSNL Gene Name
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SEMIDWARF 1
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Gene Name Synonym
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dee-geo-woo-gen dwarf(sd1-d), green revolution gene, semidwarf-1, GA C20oxidase2, semidwarf-1, reimei dwarf(sd1-r), Calrose76(sd1-3), Jikkoku(sd1-2). rice GA 20-oxidase2, GA 20-oxidase 2, Gibberellin 20 oxidase 2, Gibberellin C-20 oxidase 2, GA 20-oxidase 2, Protein semidwarf-1, semi-dwarf1
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Protein Name
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GIBBERELLIN 20 OXIDASE 2
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Allele
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sd1-a, sd1-2, sd1-c (=sd1-3), sd1-d(=sd1-1), sd1-r (=sd1-4), SD1-in, SD1-ja, SD1-EQ, SD1-GR, SD1C9285
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Chromosome No.
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1
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Explanation
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sd1-d is a dwarf gene of Taiwanese cultivar "Dee-geo-woo-gen". Dwarfness is due to low amount of active gibbelleric acid caused by mutation of GA20ox-2 gene. Most of the useful semi-dwarfs of practical value in rice breeding have allelic dwarfing genes at this locus irrespective of their source of origin. When introduced to Fujiminori background, culm length reduced by 18.4cm while sd1-r 12.1cm((Murai and Yamamoto, 2001, Murai et al. 2003). sd1-a (Plant height is shorter by 12 cm than original strain T65). sd1-c(Dwarfing gene obtained from Calrose treated by gamma-ray. Effect of dwarfness is equal to or less than sd1-d).
AB077025, AF465255, AF465256, AY114310, U50333. AB213460-AB213479. GA20 oxidase, Gibberellin-20 oxidase, Putative gibberelin 20-oxidase. PO:0009047; stem. GRO:0007047; 02-seedling ; GRO:0007139; A-vegetative stage ; GRO:0007040; rice growth stage. AB538268(SD1-in), AB538265(SD1-ja). SD1-in and SD1-ja were published in Murai et al. (2011, online-published in 2010).
This gene catalyzes successive oxidations at the C-20 site of GAs (gibberellic acids), and produces substrates for GA 3-oxidase. This gene is located on chromosome 1 at 149.1cM. Loss of function induces sd1. EC=1.14.11.- P0C5H5(indica), Q0JH50(japonica). AB633592-AB633625 (Asano et al. 2011). EU179376-EU179380 (wild rice species). AB633581-AB633625 (O. sativa and other wild rice species). JN541407-JN542382 (O. sativa and other wild rice species). AB469066-AB469082 (O. sativa and other wild rice species). LOC_Os01g66100. AB669899 (indica).
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Trait Class
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Biochemical character
Vegetative organ - Culm
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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CT834906
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MSU ID
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LOC_Os01g66100.1
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RAP ID
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Os01g0883800
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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73.0
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Link map
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Classical linkage map
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References
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Mol. Cells 2024 47(8) 100093
osmyb14, an R2R3-MYB transcription factor, regulates plant height through the control of hormone metabolism in rice.
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Int J Mol Sci 2024 25(14)
Characterization of the <i>ddt1</i> Mutant in Rice and Its Impact on plant height Reduction and Water Use Efficiency.
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G3 (Bethesda) 2023 13(7)
Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.
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Song G., Son S., Nam S., Suh E.J., Lee S.I., Park S.R.
Int J Mol Sci 2023 24(7)
OsWRKY114 Is a Player in Rice Immunity against <i>Fusarium fujikuroi</i>.
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Park J.R., Jang Y.H., Kim E.G., Hur S.S., Kim K.M.
Int J Mol Sci 2023 24(23)
Quantitative Trait Loci Mapping Identified Candidate Genes Involved in plant height Regulation in Rice.
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Guo W., Chen S., Xu Y., Cai X.
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OsASR6 Alleviates Rice Resistance to <i>Xanthomonas oryzae</i> via Transcriptional Suppression of <i>OsCIPK15</i>.
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OsABF1 Represses Gibberellin Biosynthesis to Regulate plant height and Seed Germination in Rice (<i>Oryza sativa</i> L.).
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The Intronic cis Element SE1 Recruits trans-Acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.
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Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.
Nat. Genet. 2018 50(2) 278-284
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.
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Kuroha T., Nagai K., Gamuyao R., Wang D.R., Furuta T., Nakamori M., Kitaoka T., Adachi K., Minami A., Mori Y., Mashiguchi K., Seto Y., Yamaguchi S., Kojima M., Sakakibara H., Wu J., Ebana K., Mitsuda N., Ohme-Takagi M., Yanagisawa S., Yamasaki M., Yokoyama R., Nishitani K., Mochizuki T., Tamiya G., McCouch S.R., Ashikari M.
Science 2018 361(6398) 181-186
Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.
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Nature 2018 560(7720) 595-600
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Front Plant Sci 2017 8 1698
Brassinosteroids Regulate OFP1, a DLT interacting protein, to Modulate Plant Architecture and Grain Morphology in Rice.
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SHORT and Solid Culm/RFL/APO2 for culm development in rice.
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Front Plant Sci 2016 7 1801
Genome-Wide Association Study for plant height and grain yield in Rice under Contrasting Moisture Regimes.
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Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.
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Regulation of OsmiR156h through Alternative Polyadenylation Improves grain yield in Rice.
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Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in ricec w open
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Euphytica 2011 178 111-126
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From the Cover: Artificial selection for a green revolution gene during japonica rice domestication.
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Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis.
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BMC Evol. Biol. 2009 9 206
Evolutionary rate patterns of the Gibberellin pathway genes
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Gibberellin metabolism and its regulation.
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Plant Physiol. 2007 144(1) 121-33
The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism.
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Genetic and molecular analysis of utility of sd1 alleles in rice breeding
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Genealogy of the "Green Revolution" gene in rice.
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Breeding Science 2004 54(4) 333-340
Effects of sd1 and Ur1 (Undulate rachis -1) on Lodging Resistance and Related Traits in Rice
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RGN 2003 20 5-8
Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups. I. Registration of new gene symbols.
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Kaneko, M., H. Itoh, Y. Inukai, T. Sakamoto, M. Ueguchi-Tanaka, M. Ashikari and M. Matsuoka
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Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants?
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Murai, M., K. Maruyama and F. Kikuchi
RGN 2003 20 5
Gene symbol registration No.155. Gene symbol: sd1-d, sd1-r. In: Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups. I. Registration of new gene symbols.(Yoshimura, A. and Y. Nagato)
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Spielmeyer,W., Ellis,M.H. and Chandler,P.M.
Proc. Natl. Acad. Sci. U.S.A. 2002 99(13) 9043-9048
Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene.
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Sasaki,A., Ashikari,M., Ueguchi-Tanaka,M., Itoh,H., Nishimura,A., Swapan,D., Ishiyama,K., Saito,T., Kobayashi,M., Khush,G.S., Kitano,H. and Matsuoka,M.
Nature 2002 416(6882) 701-702
Green revolution: A mutant gibberellin-synthesis gene in rice.
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Ashikari, M., A. Sasaki, M. Ueguchi-Tanaka, H. Itoh, A. Nishimura, S. Datta, K. Ishiyama, T. Saito, M. Kobayashi, G.S. Khush, H. Kitano and M. Matsuoka
Breeding Science 2002 52 143-150
Loss-of-function of a rice gibberellin biosynthetic gene, GA20 oxidase (GA20ox-2), led to the rice 'Green revolution'.
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Murai, M., I. Takamure, S. Sato, T. Tokutome and Y. Sato
Breeding Science 2002 52 95-100
Effects of the dwarfing gene originating from 'Dee-geo-woo-gen' on yield and its related traits in rice.
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Monna L., Kitazawa N., Yoshino R., Suzuki J., Masuda H., Maehara Y., Tanji M., Sato M., Nasu S., Minobe Y.
DNA Res. 2002 9(1) 11-7
Positional cloning of rice semidwarfing gene, sd-1: rice "green revolution gene" encodes a mutant enzyme involved in gibberellin synthesis.
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Rutger J.N., Mackill D.J.
Rice Genetics, IV. IRRI, Manila, Philippines 2001 27-38
Application of Mendelian genetics in rice breeding
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Murai, M. and H. Yamamoto
SABRAO Journal 2001 33(1) 21-30
Allelic relationships and height effects of rice dwarfing genes from cvv. Dee-geo-woo-gen, Calrose 76 and Reimei determined in a constant genetic background.
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Maeda, H., T. Ishii, H. Mori, J. Kuroda, M. Horimoto, I. Takamure, T. Kinoshita and O. Kamijima
Breeding Science 1997 47 317-320.
High density molecular map of semidwarfing gene, sd-1, in rice (Oryza sativa L.).
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Rao, D.M.R. and T.P. Reddy
Euphytica 1997 95 45-48.
Genetic analysis of semidwarf mutants induced in indica rice (Oryza sativa L.).
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Kamijima, O., T. Tanisaka and T. Kinoshita
RGN 1996 13 19-25.
Gene symbols for dwarfness.
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Maeda, H., H. Mori, J. Kuroda, T. Ishii, I. Takamure, T. Kinoshita and O. Kamijima
Breeding Science 1996 46(Suppl. 1) 66
Molecular mapping of semidwarfing gene, sd-1, using RAPD and RFLP markers.
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Murai, M., S. Sato, K. Ise and Y. Semihira
Breeding Science 1995 45 163-171.
Effects of the dwarfing gene from Dee-geo-woo-gen and others on emergence ability under deep seeding condition in rice.
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Nakamura, A., S. Komatsu, B.S. Xia and H. Hirano
Breeding Science 1995 45 185-188.
Linkage analysis of gene loci for seed glutelin (Glu-1), semidwarf (sd-1) and shattering habit (sh-2) in rice (Oryza sativa L.).
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Fukuta, Y.
Breeding Science 1995 45 15-19.
RFLP mapping of a shattering-resistance gene in the mutant line, SR-1 induced from an indica rice variety, Nan-jing 11.
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Maeda, H., T. Ishii, I. Takamure, T. Kinoshita and O. Kamijima
Breeding Science 1995 45(Suppl. 1) 93
Molecular mapping of semidwarfing gene, sd-1, using RAPD and RFLP markers.
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Yu, Z.H., S.R. McCouch, T. Kinoshita, S. Sato and S.D. Tanksley
Genome 1995 38 566-574.
Association of morphological and RFLP markers in rice (Oryza sativa L. ).
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Murai, M., N. Shinbashi, S. Sato, K. Sato, H. Araki and M. Ehara
Breeding Science 1995 45 7-14.
Effect of dwarfing gene from Dee-geo-woo-gen on culm and internode lengths, and its response to fertilizer in rice.
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Tanisaka, T., N. Takemori, T. Yabu, H. Egashira, Y. Okumoto and H. Yamagata
Breeding Science 1994 44 397-403.
Two useful semidwarf genes in a short-culm mutant line HS90 of rice.
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Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994 138 1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
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Cho, Y.G., M.Y. Eun, Y.H. Kim, T.Y. Chung and Y.A. Chae
Theor. Appl. Genet. 1994 89 49-53.
The semidwarf gene, sd-1, of rice (Oryza sativa L.).I. Linkage with the esterase locus, EstI-2.
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Cho, Y.G., M.Y. Eun, S.R. McCouch and Y.A. Chae
Theor. Appl. Genet. 1994 89 54-59.
The semidwarf gene, sd-1, of rice (Oryza sativa L.).II. Molecular mapping and marker-assisted selection.
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Maeda, H., I. Takamure, T. Kinoshita and O. Kamijima
Japan. J. Breed. 1993 43(Suppl. 2) 91
Identification of RAPD markers linked to the semidwarfing gene at the sd-1 locus in rice.
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Ogi, Y., H. Kato, K. Maruyama and F. Kikuchi
Japan. J. Breed. 1993 43 267-275.
The effects on the culm length and other agronomic characters caused by semidwarfing genes at the sd-1 locus in rice.
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Fukuchi, A., A. Nakamura, H. Hirano, H. Hirochika and F. Kikuchi
RGN 1992 9 50-52.
Linkage analysis for a semidwarfing gene sd-1 on chromosome 1.
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Murai, M., S. Hirose, S. Sato
Japan. J. Breed. 1992 42 811-823
Effect of the dwarfing gene from Dee-geo-woo-gen and others on cool temperature tolerance at flowering stage in rice.
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Murai, M., S. Hirose, N. Suzuki, M. Yamane, S. Sato
Japan. J. Breed. 1992 42 91-102
Effects of the dwarfing gene from Dee-geo-woo-gen and three others on high temperature tolerance at flowering.
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Yu, Z.H., T. Kinoshita, S. Sato and S.D. Tanksley
RGN 1992 9 116-118.
Morphological and RFLP markers are associated in rice.
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Tsai, K.H.
RGN 1991 8 109-110.
Chromosomal location of gene sd-1 examined with isogenic translocation lines of Taichung 65.
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Kinoshita, T.
RGN 1991 8 2-3.
I. Registration of new gene symbols.
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Tsai, K.H.
RGN 1991 8 112-113.
Multiple alleles detected at locus sd-1.
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Murai, M., S. Hirose, S. Sato, M. Takeda
Japan. J. Breed. 1991 41 241-254
Effects of dwarfing genes from Dee-geo-woo-gen and other varieties on cool temperature tolerance at booting stage in rice.
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Murai, M., S. Hirose, A. Kusutani, N. Shinbashi, Y. Nishikawa
Japan. J. Breed. 1991 41 581-593
Relation between cool temperature damage at booting stage and water depth in dwarf lines of rice.
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Futsuhara, Y., F. Kikuchi and J.N. Rutger
RGN 1986 3 8-10
Gene symbols for dwarfness.
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Kikuchi, F. and H. Ikehashi
Gamma Field Symposia 1983 22 17-30.
Semidwarfing genes of high-yielding rice varieties in Japan.
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Suh, H.S. and M.H. Heu
Korean J. Breed. 1978 10(1) 1-6.
The segregation mode of plant height in the cross of rice varieties. XI. Linkage analysis of the semi-dwarfness of the rice variety 'Tongil'.
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Rutger, J.N., M.L. Peterson, C.H. Hu and W.F. Lehman
Crop Sci. 1976 16 631-635.
Induction of useful short stature and early maturing mutants in two japonica rice cultivars.
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Seetharaman, R. and D.P. Srivastava
Indian J. Genet. & Plant Breed. 1969 29 220-226.
Inheritance of semi-dwarf stature and cigar shaped panicle in rice.
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Futsuhara, Y.
Gamma Field Symposia 1968 7 87-109.
Breeding of a new rice variety Reimei by gamma-ray irradiation.
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Aquino, R.C. and P.R. Jennings
Crop Sci. 1966 6(6) 551-554.
Inheritance and significance of dwarfism in an Indica rice variety.
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TextPresso Search
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Search textpresso for SD1
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060842
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Ontologies
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Gene Ontology
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photoperiodism, flowering( GO:0048573 )
iron ion binding( GO:0005506 )
response to abiotic stimulus( GO:0009628 )
gibberellin metabolic process( GO:0009685 )
unidimensional cell growth( GO:0009826 )
oxidoreductase activity( GO:0016491 )
gibberellin 20-oxidase activity( GO:0045544 )
gibberellin biosynthetic process( GO:0009686 )
oxidation reduction( GO:0055114 )
internode patterning( GO:0080006 )
response to deep water( GO:0030912 )
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Trait Ontology
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enzyme activity( TO:0000599 )
plant height( TO:0000207 )
growth and development trait( TO:0000357 )
plant growth hormone sensitivity( TO:0000401 )
stem length( TO:0000576 )
submergence tolerance( TO:0000524 )
gibberellic acid content( TO:0002675 )
flowering time( TO:0002616 )
days to heading( TO:0000137 )
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Plant Ontology
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stem( PO:0009047 )
stem internode( PO:0020142 )
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Related Strains
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Phenotype images
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Last updated
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Nov 19, 2024
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