Update info.Gene - Detail
Detail of Gene
Click here for feedback| Basic Information | |
|---|---|
| CGSNL Gene Symbol | HDAC3 |
| Gene Symbol Synonym | OsHDAC3, HDA703, OsHDA703 |
| CGSNL Gene Name | CLASS-1 TYPE HISTONE DEACETYLASE 3 |
| Gene Name Synonym | class-1 type histone deacetylase3, histone deacetylase 703 |
| Protein Name | CLASS-1 TYPE HISTONE DEACETYLASE 3 |
| Allele | |
| Chromosome No. | 2 |
| Explanation | This gene controls histone deacetylase and is expressed in the root and callus cells, but not in the leaves. AF513384. Q7Y0Y6. RPD/HDA1 family. |
| Trait Class |
Biochemical character
Tolerance and resistance - Stress tolerance Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK071228
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| MSU ID |
LOC_Os02g12350.1
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| RAP ID |
Os02g0214900 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
Link to INSD Accession List |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Hou J., Ren R., Xiao H., Chen Z., Yu J., Zhang H., Shi Q., Hou H., He S., Li L.
Planta 2021 253(3) 72 Characteristic and evolution of HAT and HDAC genes in Gramineae genomes and their expression analysis under diverse stress in Oryza sativa.
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Hu Y,Qin F,Huang L,Sun Q,Li C,Zhao Y,Zhou DX
Biochem. Biophys. Res. Commun. 2009 388 266-71 Rice histone deacetylase genes display specific expression patterns and developmental functions.
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Jang, I.C., Y.M. Park, S.I. Song, H.J. Kwon, B.H. Nahm and J.K. Kim
Plant J. 2003 33 (3) 531-541 Structure and expression of the rice class-1 type histone deacetylase genes OsHDAC1-3: OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture.
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| TextPresso Search | Search textpresso for HDAC3 ( Recent references may be retrievable, but without any warranty ) |
| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
response to auxin stimulus( GO:0009733 )
response to cold( GO:0009409 ) response to salt stress( GO:0009651 ) response to water deprivation( GO:0009414 ) regulation of transcription from RNA polymerase II promoter( GO:0006357 ) histone deacetylation( GO:0016575 ) chromatin organization( GO:0006325 ) zinc ion binding( GO:0008270 ) nucleus( GO:0005634 ) histone deacetylase activity( GO:0004407 ) |
| Trait Ontology |
drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 ) cold tolerance( TO:0000303 ) auxin sensitivity( TO:0000163 ) |
| Plant Ontology |
plant embryo( PO:0009009 )
carpel( PO:0009030 ) inflorescence( PO:0009049 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Feb 20, 2023 | |
