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Basic Information
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CGSNL Gene Symbol
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HDAC2
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Gene Symbol Synonym
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OsHDAC2, HDA710, OsHDA710
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CGSNL Gene Name
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CLASS-1 TYPE HISTONE DEACETYLASE 2
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Gene Name Synonym
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class-1 type histone deacetylase2, histone deacetylase 710
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Protein Name
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CLASS-1 TYPE HISTONE DEACETYLASE 2
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Allele
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Chromosome No.
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2
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Explanation
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This gene controls histone deacetylase. This gene is expressed in the root and callus cells, but not in the leaves. AF513383. Q6YV04. OsHDA710 in Hou et al. 2921. RPD/HDA1 family.
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Trait Class
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Tolerance and resistance - Stress tolerance
Biochemical character
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK103097
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MSU ID
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LOC_Os02g12380.1
LOC_Os02g12380.2
LOC_Os02g12380.3
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RAP ID
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Os02g0215200
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Huang Y., Liu J., Cheng L., Xu D., Liu S., Hu H., Ling Y., Yang R., Zhang Y.
Plants (Basel) 2024 13(17)
Genome-Wide Analysis of the Histone Modification Gene (<i>HM</i>) Family and Expression Investigation during Anther Development in Rice (<i>Oryza sativa</i> L.).
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Hou J., Ren R., Xiao H., Chen Z., Yu J., Zhang H., Shi Q., Hou H., He S., Li L.
Planta 2021 253(3) 72
Characteristic and evolution of HAT and HDAC genes in Gramineae genomes and their expression analysis under diverse stress in Oryza sativa.
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Xie Y., Zhang Y., Han J., Luo J., Li G., Huang J., Wu H., Tian Q., Zhu Q., Chen Y., Kawano Y., Liu Y.G., Chen L.
Mol Plant 2018 11(5) 720-735
The Intronic cis Element SE1 Recruits trans-Acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.
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Hu Y,Qin F,Huang L,Sun Q,Li C,Zhao Y,Zhou DX
Biochem. Biophys. Res. Commun. 2009 388 266-71
Rice histone deacetylase genes display specific expression patterns and developmental functions.
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Jang, I.C., Y.M. Park, S.I. Song, H.J. Kwon, B.H. Nahm and J.K. Kim
Plant J. 2003 33 (3) 531-541
Structure and expression of the rice class-1 type histone deacetylase genes OsHDAC1-3: OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to heat( GO:0009408 )
response to auxin stimulus( GO:0009733 )
response to cold( GO:0009409 )
response to salt stress( GO:0009651 )
response to water deprivation( GO:0009414 )
regulation of transcription from RNA polymerase II promoter( GO:0006357 )
histone deacetylation( GO:0016575 )
chromatin organization( GO:0006325 )
zinc ion binding( GO:0008270 )
nucleus( GO:0005634 )
histone deacetylase activity( GO:0004407 )
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Trait Ontology
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drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
cold tolerance( TO:0000303 )
auxin sensitivity( TO:0000163 )
heat tolerance( TO:0000259 )
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Plant Ontology
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plant embryo( PO:0009009 )
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Related Strains
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-
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Phenotype images
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-
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Last updated
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Jan 14, 2025
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