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Basic Information
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CGSNL Gene Symbol
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HDAC1
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Gene Symbol Synonym
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OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702
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CGSNL Gene Name
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CLASS-1 TYPE HISTONE DEACETYLASE 1
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Gene Name Synonym
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class-1 type histone deacetylase 1, histone deacetylase 1, histone deacetylase 702
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Protein Name
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CLASS-1 TYPE HISTONE DEACETYLASE 1
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Allele
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Chromosome No.
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6
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Explanation
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This gene controls histone deacetylase. This gene widely expressed in the leaves, roots, and callus cells. AF513382. Q7Y0Y8. RPD/HDA1 family. GO:1900367: positive regulation of defense response to insect.
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Trait Class
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Vegetative organ - Leaf
Tolerance and resistance - Disease resistance
Vegetative organ - Root
Biochemical character
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Insect resistance
Vegetative organ - Culm
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK068051
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MSU ID
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LOC_Os06g38470.1
LOC_Os06g38470.2
LOC_Os06g38470.3
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RAP ID
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Os06g0583400
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Huang Y., Liu J., Cheng L., Xu D., Liu S., Hu H., Ling Y., Yang R., Zhang Y.
Plants (Basel) 2024 13(17)
Genome-Wide Analysis of the Histone Modification Gene (<i>HM</i>) Family and Expression Investigation during Anther Development in Rice (<i>Oryza sativa</i> L.).
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Sun B., Shen Y., Chen S., Shi Z., Li H., Miao X.
New Phytol. 2023 239(2) 720-738
A novel transcriptional repressor complex MYB22-TOPLESS-HDAC1 promotes rice resistance to brown planthopper by repressing F3'H.expression.
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Hou J., Ren R., Xiao H., Chen Z., Yu J., Zhang H., Shi Q., Hou H., He S., Li L.
Planta 2021 253(3) 72
Characteristic and evolution of HAT and HDAC genes in Gramineae genomes and their expression analysis under diverse stress in Oryza sativa.
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Wang R., Wang H.L., Tang R.P., Sun M.Y., Chen T.M., Duan X.C., Lu X.F., Liu D., Shi X.C., Laborda P., Wang S.Y.
Plants (Basel) 2020 9(12)
<i>Pseudomonas putida</i> Represses JA- and SA-Mediated Defense Pathways in Rice and Promotes an Alternative Defense Mechanism Possibly through ABA Signaling.
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Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018 9 1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
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Cheng X., Zhang S., Tao W., Zhang X., Liu J., Sun J., Zhang H., Pu L., Huang R., Chen T.
Plant Physiol. 2018 178(2) 824-837
INDETERMINATE SPIKELET1 Recruits Histone Deacetylase and a Transcriptional Repression Complex to Regulate Rice salt tolerance.
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Tang N., Ma S., Zong W., Yang N., Lv Y., Yan C., Guo Z., Li J., Li X., Xiang Y., Song H., Xiao J., Li X., Xiong L.
Plant Cell 2016
MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.
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Chung PJ,Kim YS,Jeong JS,Park SH,Nahm BH,Kim JK
Plant J. 2009 59 764-76
The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice.
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Chung PJ,Kim JK
Plant Signal Behav 2009 4(7) 675-7
Epigenetic interaction of OsHDAC1 with the OsNAC6 gene promoter regulates rice root growth.
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Hu Y,Qin F,Huang L,Sun Q,Li C,Zhao Y,Zhou DX
Biochem. Biophys. Res. Commun. 2009 388 266-71
Rice histone deacetylase genes display specific expression patterns and developmental functions.
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Jang, I.C., Y.M. Park, S.I. Song, H.J. Kwon, B.H. Nahm and J.K. Kim
Plant J. 2003 33 (3) 531-541
Structure and expression of the rice class-1 type histone deacetylase genes OsHDAC1-3: OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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defense response to insect( GO:0002213 )
negative regulation of transcription, DNA-dependent( GO:0045892 )
response to water deprivation( GO:0009414 )
response to heat( GO:0009408 )
response to flooding( GO:0009413 )
response to cold( GO:0009409 )
response to salt stress( GO:0009651 )
response to bacterium( GO:0009617 )
auxin mediated signaling pathway( GO:0009734 )
root development( GO:0048364 )
histone deacetylase activity( GO:0004407 )
chromatin remodeling( GO:0006338 )
transcription corepressor activity( GO:0003714 )
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Trait Ontology
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root length( TO:0000227 )
leaf width( TO:0000370 )
stem thickness( TO:0000339 )
root development trait( TO:0000656 )
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 )
flooding related trait( TO:0000114 )
heat tolerance( TO:0000259 )
drought tolerance( TO:0000276 )
brown planthopper resistance( TO:0000424 )
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Plant Ontology
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root development stage( PO:0007520 )
carpel( PO:0009030 )
inflorescence( PO:0009049 )
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Related Strains
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-
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Phenotype images
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-
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Last updated
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Feb 19, 2025
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Update info.