Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol HDAC1
Gene Symbol Synonym OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702
CGSNL Gene Name CLASS-1 TYPE HISTONE DEACETYLASE 1
Gene Name Synonym class-1 type histone deacetylase 1, histone deacetylase 1
Protein Name CLASS-1 TYPE HISTONE DEACETYLASE 1
Allele
Chromosome No. 6
Explanation This gene controls histone deacetylase. This gene widely expressed in the leaves, roots, and callus cells. AF513382.
Trait Class Vegetative organ - Root
Vegetative organ - Culm
Biochemical character
Vegetative organ - Leaf
Tolerance and resistance - Disease resistance
Expression
Sequence/Locus
cDNA Accession No. AK068051
MSU ID LOC_Os06g38470.1
LOC_Os06g38470.2
LOC_Os06g38470.3
RAP ID Os06g0583400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Wang R., Wang H.L., Tang R.P., Sun M.Y., Chen T.M., Duan X.C., Lu X.F., Liu D., Shi X.C., Laborda P., Wang S.Y.
Plants (Basel) 2020  9(12) 
<i>Pseudomonas putida</i> Represses JA- and SA-Mediated Defense Pathways in Rice and Promotes an Alternative Defense Mechanism Possibly through ABA Signaling.
Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018  9  1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
Cheng X., Zhang S., Tao W., Zhang X., Liu J., Sun J., Zhang H., Pu L., Huang R., Chen T.
Plant Physiol. 2018  178(2)  824-837
INDETERMINATE SPIKELET1 Recruits Histone Deacetylase and a Transcriptional Repression Complex to Regulate Rice salt tolerance.
Tang N., Ma S., Zong W., Yang N., Lv Y., Yan C., Guo Z., Li J., Li X., Xiang Y., Song H., Xiao J., Li X., Xiong L.
Plant Cell 2016   
MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.
Chung PJ,Kim JK
Plant Signal Behav 2009  4(7)  675-7
Epigenetic interaction of OsHDAC1 with the OsNAC6 gene promoter regulates rice root growth.
Hu Y,Qin F,Huang L,Sun Q,Li C,Zhao Y,Zhou DX
Biochem. Biophys. Res. Commun. 2009  388  266-71
Rice histone deacetylase genes display specific expression patterns and developmental functions.
Chung PJ,Kim YS,Jeong JS,Park SH,Nahm BH,Kim JK
Plant J. 2009  59  764-76
The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice.
Jang, I.C., Y.M. Park, S.I. Song, H.J. Kwon, B.H. Nahm and J.K. Kim
Plant J. 2003  33 (3)  531-541
Structure and expression of the rice class-1 type histone deacetylase genes OsHDAC1-3: OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture.
TextPresso Search Search textpresso for HDAC1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to bacterium( GO:0009617 )
auxin mediated signaling pathway( GO:0009734 )
root development( GO:0048364 )
histone deacetylase activity( GO:0004407 )
chromatin remodeling( GO:0006338 )
transcription corepressor activity( GO:0003714 )
Trait Ontology root length( TO:0000227 )
leaf width( TO:0000370 )
stem thickness( TO:0000339 )
root development trait( TO:0000656 )
Plant Ontology root development stage( PO:0007520 )
Related Strains
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Phenotype images
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Last updated
Jun 3, 2021


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