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Basic Information
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CGSNL Gene Symbol
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FC1
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Gene Symbol Synonym
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fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1, MP3, OsMP3
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CGSNL Gene Name
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FINE CULM 1
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Gene Name Synonym
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fine culm1, fine culm 1, fine culm-1, lateral branching-1(t), teosinte-branching 1, Fine culm 1, teosinte branched1 protein, teosinte branched 1 protein, transcription factor OsTB1, teosinte branched1, FINE CULM1, MORE PANICLES 3
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Protein Name
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TEOSINTE BRANCHED1 PROTEIN
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Allele
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fc1, fc1-1, fc1-2, ostb1
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Chromosome No.
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3
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Explanation
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Many tillers with fine culm and normal height. [132] This gene controls lateral branching of shoot system. OsTB1 is a countrpart of maize TB1 (TEOSINTE BRANCHED 1), being located on chromosome 3 closely linked with RFLP marker C944. Negatively regulate the lateral branching. transcription factor TCP family. a negative regulator of tiller bud outgrowth. AB088343. AF322143, AY043215, AY286002. GRO:0007048; 04-stem elongation stage ; GRO:0007148; 05-booting stage ; GRO:0007049; 03-tillering stage. GO:1901698: response to nitrogen compound. GO:1902347: response to strigolactone. GO:0090548: response to nitrate starvation. TO:0000952: stem weight.
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Trait Class
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Vegetative organ - Culm
Reproductive organ - panicle
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
Reproductive organ - Spikelet, flower, glume, awn
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK107083
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MSU ID
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LOC_Os03g49880.1
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RAP ID
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Os03g0706500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
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IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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146.0
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Link map
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Classical linkage map
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References
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Zheng Q., Zhou Z., Li X., Lan Y., Huang R., Zhang S., Li H.
Int J Mol Sci 2024 25(19)
<i>Heading date 3a</i> Stimulates Tiller Bud Outgrowth in <i>Oryza sativa</i> L. through Strigolactone Signaling Pathway.
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Zhang Q., Xie J., Zhu X., Ma X., Yang T., Khan N.U., Zhang S., Liu M., Li L., Liang Y., Pan Y., Li D., Li J., Li Z., Zhang H., Zhang Z.
Plant Biotechnol. J. 2023 21(5) 1044-1057
Natural variation in tiller number 1 affects its interaction with TIF1 to regulate tillering in rice.
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Takai T., Taniguchi Y., Takahashi M., Nagasaki H., Yamamoto E., Hirose S., Hara N., Akashi H., Ito J., Arai-Sanoh Y., Hori K., Fukuoka S., Sakai H., Tokida T., Usui Y., Nakamura H., Kawamura K., Asai H., Ishizaki T., Maruyama K., Mochida K., Kobayashi N., Kondo M., Tsuji H., Tsujimoto Y., Hasegawa T., Uga Y.
Plant J. 2023 114(4) 729-742
MORE PANICLES 3, a natural allele of OsTB1/FC1, impacts rice yield in paddy fields at elevated CO2 levels.
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Xu T., Fu D., Xiong X., Zhu J., Feng Z., Liu X., Wu C.
PLoS Genet. 2023 19(4) e1010698
OsbHLH067, OsbHLH068, and OsbHLH069 redundantly regulate inflorescence axillary meristem formation in rice.
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Beretta V.M., Franchini E., Ud Din I., Lacchini E., Van den Broeck L., Sozzani R., Orozco-Arroyo G., Caporali E., Adam H., Jouannic S., Gregis V., Kater M.M.
Plant J. 2023 115(2) 351-368
The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice.
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Zha M., Zhao Y., Wang Y., Chen B., Tan Z.
Front Plant Sci 2022 13 837136
Strigolactones and Cytokinin Interaction in Buds in the Control of Rice Tillering.
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Yang G., Wei X., Fang Z.
Front Plant Sci 2022 13 900262
Melatonin Mediates axillary bud Outgrowth by Improving Nitrogen Assimilation and Transport in Rice.
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Wang L., Ming L., Liao K., Xia C., Sun S., Chang Y., Wang H., Fu D., Xu C., Wang Z., Li X., Xie W., Ouyang Y., Zhang Q., Li X., Zhang Q., Xiao J., Zhang Q.
Mol Plant 2021 14(7) 1168-1184
Bract suppression regulated by the miR156/529-SPLs-NL1-PLA1 module is required for the transition from vegetative to reproductive branching in rice.
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Zhang S., Zhu L., Shen C., Ji Z., Zhang H., Zhang T., Li Y., Yu J., Yang N., He Y., Tian Y., Wu K., Wu J., Harberd N.P., Zhao Y., Fu X., Wang S., Li S.
Plant Cell 2020
Natural allelic variation in a modulator of auxin homeostasis improves grain yield and nitrogen use efficiency in rice.
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Wang F., Han T., Song Q., Ye W., Song X., Chu J., Li J., Chen Z.J.
Plant Cell 2020 32(10) 3124-3138
The Rice Circadian Clock Regulates Tiller Growth and Panicle Development Through Strigolactone Signaling and Sugar Sensing.
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Strable J.
Plant Cell 2020 32(10) 3043-3044
Sugars Inform the Circadian Clock How to Shape Rice Shoots via the Strigolactone Pathway.
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Lyu J., Huang L., Zhang S., Zhang Y., He W., Zeng P., Zeng Y., Huang G., Zhang J., Ning M., Bao Y., Zhao S., Fu Q., Wade L.J., Chen H., Wang W., Hu F.
Nat Commun 2020 11(1) 725
Neo-functionalization of a Teosinte branched 1 homologue mediates adaptations of upland rice.
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Fang Z., Ji Y., Hu J., Guo R., Sun S., Wang X.
Mol Plant 2020 13(4) 586-597
Strigolactones and Brassinosteroids Antagonistically Regulate the Stability of the D53-OsBZR1 Complex to Determine FC1 Expression in Rice Tillering.
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Yin X., Liu X., Xu B., Lu P., Dong T., Yang D., Ye T., Feng Y.Q., Wu Y.
J. Exp. Bot. 2019 70(15) 3895-3909
OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the abscisic acid response in rice.
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Duan E., Wang Y., Li X., Lin Q., Zhang T., Wang Y., Zhou C., Zhang H., Jiang L., Wang J., Lei C., Zhang X., Guo X., Wang H., Wan J.
Plant Cell 2019 31(5) 1026-1042
OsSHI1 Regulates Plant Architecture Through Modulating the Transcriptional Activity of IPA1 in Rice.
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Huang W., Bai G., Wang J., Zhu W., Zeng Q., Lu K., Sun S., Fang Z.
Front Plant Sci 2018 9 300
Two Splicing Variants of <i>OsNPF7.7</i> Regulate shoot branching and Nitrogen Utilization Efficiency in Rice.
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Wang J., Lu K., Nie H., Zeng Q., Wu B., Qian J., Fang Z.
Rice (N Y) 2018 11(1) 12
Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.
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Wang J., Yu H., Xiong G., Lu Z., Jiao Y., Meng X., Liu G., Chen X., Wang Y., Li J.
Plant Cell 2017 29(4) 697-707
Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.
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Xu J., Zha M., Li Y., Ding Y., Chen L., Ding C., Wang S.
Plant Cell Rep. 2015 34(9) 1647-62
The interaction between nitrogen availability and auxin, cytokinin, and strigolactone in the control of shoot branching in rice (Oryza sativa L.).
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Deshpande G.M., Ramakrishna K., Chongloi G.L., Vijayraghavan U.
J. Exp. Bot. 2015 66(9) 2773-84
Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
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Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014 537(1) 1-5
Tillering and panicle branching genes in rice.
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Guo S., Xu Y., Liu H., Mao Z., Zhang C., Ma Y., Zhang Q., Meng Z., Chong K.
Nat Commun 2013 4 1566
The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
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Lu Z., Yu H., Xiong G., Wang J., Jiao Y., Liu G., Jing Y., Meng X., Hu X., Qian Q., Fu X., Wang Y., Li J.
Plant Cell 2013 25(10) 3743-59
Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture.
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Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013 16(2) 213-20
Genes offering the potential for designing yield-related traits in rice.
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Mondragón-Palomino M., Trontin C.
Ann. Bot. 2011 107(9) 1533-44
High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots.
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Rita SHARMA, Meenu KAPOOR, Akhilesh K. TYAGI, Sanjay KAPOOR
J Plant Mol Biol Biotechnol 2010 1(1) 24-38
Comparative transcript profiling of TCP family genes provide insight into gene functions and diversification in rice and Arabidopsis
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Minakuchi K., Kameoka H., Yasuno N., Umehara M., Luo L., Kobayashi K., Hanada A., Ueno K., Asami T., Yamaguchi S., KYOZUKA J.
Plant Cell Physiol. 2010 51(7) 1127-35
FINE culm1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice.
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Yuan,Z., Gao,S., Xue,D.W., Luo,D., Li,L.T., Ding,S.Y., Yao,X., Wilson,Z.A., Qian,Q. and Zhang,D.B.
Plant Physiol. 2009 149(1) 235-244
RETARDED PALEA1 (REP1) Controls Palea Development and Floral Zygomorphy in Rice
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Yeu S.Y., Park B.S., Sang W.G., Choi Y.D., Kim M.C., Song J.T., Paek N-C, Koh H-J, Seo H.S.
Journal of Plant Biology 2007 50(5) 600-604
The Serine proteinase inhibitor OsSerpin Is a Potent Tillering Regulator in Rice
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Arite T, Iwata H, Ohshima K, Maekawa M, Nakajima M, Kojima M, Sakakibara H, Kyozuka J.
Plant J. 2007 51(6) 1019-1029
DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.
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Takeda, T., Y. Suma, M. Suzuki, H. Kitano, M. Ueguchi-Tanaka, M. Ashikari, M. Matsuoka and C. Ueguchi
Plant J. 2003 33 (3) 513-520
The OsTB1 gene negatively regulates lateral branching in rice.
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Lukens,L. and Doebley,J.
Mol. Biol. Evol. 2001 18(4) 627-638
Molecular evolution of the teosinte branched gene among maize and related grasses.
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Yoshimura, A., O. Ideta, T. Matsumoto, T. Tsunematsu and N. Iwata
Japan. J. Breed. 1992 42(Suppl. 1) 168-169.
Integration of conventional and RFLP linkage maps in rice. 1. On chromosomes 1, 2, 3 and 4.
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Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1985 35(Suppl. 1) 204-205.
Linkage studies in rice.On the loci of some marker genes locating on the chromosome 5.
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Iwata, N. and T. Omura
Jpn. J. Genet. 1984 59(3) 199-204.
Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.
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Iwata, N., H. Satoh and T. Omura
Japan. J. Breed. 1979 29(Suppl. 2) 182-183.
Linkage studies in rice. New genes belonging to the 11th linkage group.
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Omura, T., N. Iwata and H. Satoh
J. Fac. Agr. Kyushu Univ. 1978 23 85-93.
Linkage studies in rice (Oryza sativa L.). On some virescent and chlorina mutants.
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Iwata, N., T. Omura and H. Satoh
Japan. J. Breed. 1978 28(Suppl. 1) 170-171.
Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.
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Iwata, N. and T. Omura
J. Fac. Agr. Kyushu Univ. 1977 21 117-127.
Linkage studies in rice (Oryza sativa L.). On some mutants derived from chronic gamma irradiation.
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Iwata, N. and T. Omura
Japan. J. Breed. 1970 20(Suppl. 2) 118-119.
Linkage studies in rice (Oryza sativa L).On some mutants derived from chronic gamma irradiation.
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TextPresso Search
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Search textpresso for FC1
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060322,GR:0080012
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Ontologies
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Gene Ontology
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inflorescence development( GO:0010229 )
regulation of shoot development( GO:0048831 )
response to cytokinin stimulus( GO:0009735 )
multicellular organismal development( GO:0007275 )
response to auxin stimulus( GO:0009733 )
response to brassinosteroid stimulus( GO:0009741 )
brassinosteroid mediated signaling( GO:0009742 )
circadian rhythm( GO:0007623 )
cell cycle( GO:0007049 )
transcription regulator activity( GO:0030528 )
nucleus( GO:0005634 )
response to hormone stimulus( GO:0009725 )
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Trait Ontology
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tiller number( TO:0000346 )
nitrogen sensitivity( TO:0000011 )
cytokinin sensitivity( TO:0000167 )
stem thickness( TO:0000339 )
culm number( TO:0000027 )
auxin sensitivity( TO:0000163 )
plant growth hormone sensitivity( TO:0000401 )
grain yield( TO:0000396 )
shoot branching( TO:0002639 )
tillering ability( TO:0000329 )
panicle number( TO:0000152 )
tiller bud dormancy( TO:0000661 )
panicle size( TO:0006032 )
spikelet number( TO:0000456 )
stem strength( TO:0000051 )
stem length( TO:0000576 )
relative yield( TO:0000153 )
inflorescence development trait( TO:0000621 )
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Plant Ontology
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inflorescence emergence stage( PO:0007041 )
axillary bud( PO:0004709 )
axillary shoot system( PO:0006343 )
stem( PO:0009047 )
shoot apical meristem( PO:0020148 )
bud( PO:0000055 )
leaf( PO:0025034 )
inflorescence development stage( PO:0001083 )
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Related Strains
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Stocks for Genes
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1
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F Lines
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23
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Backcross Fn Generation (T65)
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4
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Phenotype images
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Click to full size image in new window
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Photo from
A. Yoshimura
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Last updated
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Dec 18, 2024
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