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Basic Information
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CGSNL Gene Symbol
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MADS55
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Gene Symbol Synonym
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OsMADS55, DLN163, OsDLN163
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CGSNL Gene Name
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MADS BOX GENE 55
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Gene Name Synonym
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MADS box gene55, MADS-box transcription factor 55, DLN repressor 163, DLN motif protein 163
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Protein Name
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MADS-BOX TRANSCRIPTION FACTOR 55
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Allele
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Osmads55, osmads55
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Chromosome No.
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6
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Explanation
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Q69TG5. a SHORT VEGETATIVE PHASE-like floret meristem identity gene. SHORT VEGETATIVE PHASE (SVP) subfamily.
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Trait Class
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Vegetative organ - Culm
Reproductive organ - panicle
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Reproductive organ - Spikelet, flower, glume, awn
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK111859
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MSU ID
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LOC_Os06g11330.1
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RAP ID
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Os06g0217300
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Cui Z., Wang X., Dai Y., Li Y., Ban Y., Tian W., Zhang X., Feng X., Zhang X., Jia L., He G., Sang X.
Plant J. 2024 119(3) 1465-1480
Transcription factor osnf-yc1 regulates grain size.by coordinating the transcriptional activation of OsMADS1 in Oryza sativa L.
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Tang H., Fan J., Wang R., Zhu J., Xiang X., Dong J., Zhou L., Wang L.
G3 (Bethesda) 2023 13(7)
Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.
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Mao D., Tao S., Li X., Gao D., Tang M., Liu C., Wu D., Bai L., He Z., Wang X., Yang L., Zhu Y., Zhang D., Zhang W., Chen C.
Plant Biotechnol. J. 2022 20(6) 1154-1166
The Harbinger transposon-derived gene PANDA epigenetically coordinates panicle number AND grain size in rice.
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Hu J., Huang L., Chen G., Liu H., Zhang Y., Zhang R., Zhang S., Liu J., Hu Q., Hu F., Wang W., Ding Y.
Rice (N Y) 2021 14(1) 90
The Elite Alleles of OsSPL4 Regulate grain size and Increase Grain Yield in Rice.
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Li N., Wang Y., Lu J., Liu C.
International Journal of Genomics 2019 2019 2146391
Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice.
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Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019 20(7)
Analysis of Rice Proteins with DLN repressor Motif/S.
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Wang A., Hou Q., Si L., Huang X., Luo J., Lu D., Zhu J., Shangguan Y., Miao J., Xie Y., Wang Y., Zhao Q., Feng Q., Zhou C., Li Y., Fan D., Lu Y., Tian Q., Wang Z., Han B.
Plant Physiol. 2019 180(4) 2077-2090
The PLATZ Transcription Factor GL6 Affects Grain Length and Number in Rice.
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Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018 675 285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
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Liu Q., Han R., Wu K., Zhang J., Ye Y., Wang S., Chen J., Pan Y., Li Q., Xu X., Zhou J., Tao D., Wu Y., Fu X.
Nat Commun 2018 9(1) 852
G-protein betagamma subunits determine grain size through interaction with MADS-domain transcription factors in rice.
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Nayar S., Kapoor M., Kapoor S.
J. Exp. Bot. 2014 65(18) 5339-50
Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
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Yan D., Zhou Y., Ye S., Zeng L., Zhang X., He Z.
Sci China Life Sci 2013 56(3) 275-83
Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice.
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Yoshida A., Sasao M., Yasuno N., Takagi K., Daimon Y., Chen R., Yamazaki R., Tokunaga H., Kitaguchi Y., Sato Y., Nagamura Y., Ushijima T., Kumamaru T., Iida S., Maekawa M., Kyozuka J.
Proc. Natl. Acad. Sci. U.S.A. 2013 110(2) 767-72
TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition.
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Khanday I., Yadav S.R., Vijayraghavan U.
Plant Physiol. 2013 161(4) 1970-83
Rice LHS1/OsMADS1 Controls Floret Meristem Specification by Coordinated Regulation of Transcription Factors and Hormone Signaling Pathways.
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Lee S., Sang Chul Choi, An G.
Plant J. 2008 54(1) 93-105
Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
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Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007 8 242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
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Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003 44(12) 1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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brassinosteroid mediated signaling( GO:0009742 )
response to brassinosteroid stimulus( GO:0009741 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
sequence-specific DNA binding( GO:0043565 )
inflorescence development( GO:0010229 )
regulation of transcription, DNA-dependent( GO:0006355 )
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Trait Ontology
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inflorescence development trait( TO:0000621 )
panicle number( TO:0000152 )
grain size( TO:0000397 )
brassinosteroid sensitivity( TO:0002677 )
grain weight( TO:0000590 )
plant height( TO:0000207 )
grain width( TO:0000402 )
grain width( TO:0000975 )
grain thickness( TO:0000399 )
1000-seed weight( TO:0000382 )
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Plant Ontology
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inflorescence development stage( PO:0001083 )
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Related Strains
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Phenotype images
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Last updated
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Mar 5, 2026
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Update info.