Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol MADS55
Gene Symbol Synonym OsMADS55, DLN163, OsDLN163
CGSNL Gene Name MADS BOX GENE 55
Gene Name Synonym MADS box gene55, MADS-box transcription factor 55, DLN repressor 163, DLN motif protein 163
Protein Name MADS-BOX TRANSCRIPTION FACTOR 55
Allele
Chromosome No. 6
Explanation Q69TG5. a SHORT VEGETATIVE PHASE-like floret meristem identity gene. SHORT VEGETATIVE PHASE (SVP) subfamily.
Trait Class Reproductive organ - panicle
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Other
Expression
Sequence/Locus
cDNA Accession No. AK111859
MSU ID LOC_Os06g11330.1
RAP ID Os06g0217300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Hu J., Huang L., Chen G., Liu H., Zhang Y., Zhang R., Zhang S., Liu J., Hu Q., Hu F., Wang W., Ding Y.
Rice (N Y) 2021  14(1)  90
The Elite Alleles of OsSPL4 Regulate grain size and Increase Grain Yield in Rice.
Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019  20(7) 
Analysis of Rice Proteins with DLN repressor Motif/S.
Wang A., Hou Q., Si L., Huang X., Luo J., Lu D., Zhu J., Shangguan Y., Miao J., Xie Y., Wang Y., Zhao Q., Feng Q., Zhou C., Li Y., Fan D., Lu Y., Tian Q., Wang Z., Han B.
Plant Physiol. 2019  180(4)  2077-2090
The PLATZ Transcription Factor GL6 Affects Grain Length and Number in Rice.
Li N., Wang Y., Lu J., Liu C.
International Journal of Genomics 2019  2019  2146391
Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice.
Liu Q., Han R., Wu K., Zhang J., Ye Y., Wang S., Chen J., Pan Y., Li Q., Xu X., Zhou J., Tao D., Wu Y., Fu X.
Nat Commun 2018  9(1)  852
G-protein betagamma subunits determine grain size through interaction with MADS-domain transcription factors in rice.
Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018  675  285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
Nayar S., Kapoor M., Kapoor S.
J. Exp. Bot. 2014  65(18)  5339-50
Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
Yan D., Zhou Y., Ye S., Zeng L., Zhang X., He Z.
Sci China Life Sci 2013  56(3)  275-83
Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice.
Khanday I., Yadav S.R., Vijayraghavan U.
Plant Physiol. 2013  161(4)  1970-83
Rice LHS1/OsMADS1 Controls Floret Meristem Specification by Coordinated Regulation of Transcription Factors and Hormone Signaling Pathways.
Yoshida A., Sasao M., Yasuno N., Takagi K., Daimon Y., Chen R., Yamazaki R., Tokunaga H., Kitaguchi Y., Sato Y., Nagamura Y., Ushijima T., Kumamaru T., Iida S., Maekawa M., Kyozuka J.
Proc. Natl. Acad. Sci. U.S.A. 2013  110(2)  767-72
TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition.
Lee S., Sang Chul Choi, An G.
Plant J. 2008  54(1)  93-105
Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003  44(12)  1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
TextPresso Search Search textpresso for MADS55 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
sequence-specific DNA binding( GO:0043565 )
inflorescence development( GO:0010229 )
regulation of transcription, DNA-dependent( GO:0006355 )
Trait Ontology inflorescence development trait( TO:0000621 )
Plant Ontology inflorescence development stage( PO:0001083 )
Related Strains
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Phenotype images
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Last updated
May 24, 2022


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