Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol MADS50
Gene Symbol Synonym OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3
Gene Name Synonym MADS box gene50, MADS-box transcription factor 50, Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like, Protein AGAMOUS-like 20
Allele osmads50, osmads50-1, osmads50-2, mads50
Chromosome No. 3
Explanation This gene is a flowering activator. Q9XJ60. GO:2000280: regulation of root development.
Trait Class Tolerance and resistance - Stress tolerance
Reproductive organ - Heading date
Reproductive organ - panicle
Vegetative organ - Root
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. AK104921
MSU ID LOC_Os03g03070.1
RAP ID Os03g0122600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Dwivedi S.L., Reynolds M.P., Ortiz R.
iScience 2021  24(9)  102965
Mitigating tradeoffs in plant breeding.
Osnato M., Matias-Hernandez L., Aguilar-Jaramillo AE., Kater M.M., Pelaz S.
Plant Physiol. 2020  183(4)  1663-1680
Genes of the <i>RAV</i> Family Control Heading Date and Carpel Development in Rice.
Li N., Wang Y., Lu J., Liu C.
International Journal of Genomics 2019  2019  2146391
Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice.
Fang J., Zhang F., Wang H., Wang W., Zhao F., Li Z., Sun C., Chen F., Xu F., Chang S., Wu L., Bu Q., Wang P., Xie J., Chen F., Huang X., Zhang Y., Zhu X., Han B., Deng X., Chu C.
Proc. Natl. Acad. Sci. U.S.A. 2019  116(37)  18717-18722
<i>Ef-cd</i> locus shortens rice maturity duration without yield penalty.
Jin J., Gui S., Li Q., Wang Y., Zhang H., Zhu Z., Chen H., Sun Y., Zou Y., Huang X., Ding Y.
J Integr Plant Biol 2019   
The transcription factor GATA10 regulates fertility conversion of a two-line hybrid tms5 mutant rice via the modulation of UbL40 expression.
Shao Y., Zhou H.Z., Wu Y., Zhang H., Lin J., Jiang X., He Q., Zhu J., Li Y., Yu H., Mao C.
Plant Cell 2019  31(6)  1257-1275
OsSPL3, an SBP-Domain Protein, Regulates crown root Development in Rice.
Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018  675  285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
Du Y., He W., Deng C., Chen X., Gou L., Zhu F., Guo W., Zhang J., Wang T.
PLoS ONE 2016  11(3)  e0150458
Flowering-Related RING Protein 1 (FRRP1) Regulates flowering time and Yield Potential by Affecting histone H2B Monoubiquitination in Rice (Oryza Sativa).
Jin J., Shi J., Liu B., Liu Y., Huang Y., Yu Y., Dong A.
Plant Physiol. 2015   
MRG702, a reader protein of H3K4me3 and H3K36me3, is involved in brassinosteroid-regulated growth and flowering time control in rice.
Wang J., Hu J., Qian Q., Xue H.W.
Mol Plant 2013  6(2)  514-27
LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF.
Naeem M.a c, Freed S.b, Quan Z.G.a
Int J Agric Biol 2013  15  631-639
Molecular genetic studies of heading date gene OsMADS50 by using single segment substitution lines in Oryza sativa
Sun C., Fang J., Zhao T., Xu B., Zhang F., Liu L., Tang J., Zhang G., Deng X., Chen F., Qian Q., Cao X., Chu C.
Plant Cell 2012  24(8)  3235-47
The histone methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice.
Maas LF,McClung A,McCouch S
Theor. Appl. Genet. 2010  120(5)  895-908
Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice.
Choong-Hwan Ryu, Lee S., Lae-Hyeon Cho, Song Lim Kim, Yang-Seok Lee, Sang Chul Choi, Hee Joong Jeong, Yi J., Soon Ju Park, Chang-Deok Han, An G.
Plant Cell Environ. 2009  32(10)  1412-27
OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice.
Komiya R., Yokoi S., Shimamoto K.
Development 2009  136(20)  3443-50
A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.
Park SJ,Kim SL,Lee S,Je BI,Piao HL,Park SH,Kim CM,Ryu CH,Park SH,Xuan YH,Colasanti J,An G,Han CD
Plant J. 2008  56  1018-29
Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod.
Rao NN,Prasad K,Kumar PR,Vijayraghavan U
Proc. Natl. Acad. Sci. U.S.A. 2008  105  3646-51
Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture.
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
Lee, S. J. Kim, J.J. Han, M.J. Han and G. An
Plant J. 2004  38 (5)  754-764
Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice.
Tadege M, Sheldon CC, Helliwell CA, Upadhyaya NM, Dennis ES, Peacock WJ.
Plant Biotechnol J. 2003  1(5)  361-9
Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice.
Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003  44(12)  1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
Shinozuka, Y., S. Kojima, A. Shomura, H. Ichimura, M. Yano, K. Yamamoto and T. Sasaki
DNA Res. 1999  6  123-129
Isolation and characterization of rice MADS box gene homologues and their RFLP mapping.
TextPresso Search Search textpresso for MADS50 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to temperature stimulus( GO:0009266 )
regulation of transcription, DNA-dependent( GO:0006355 )
flower development( GO:0009908 )
cell differentiation( GO:0030154 )
sequence-specific DNA binding( GO:0043565 )
DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
inflorescence development( GO:0010229 )
root development( GO:0048364 )
pollen wall assembly( GO:0010208 )
pollen development( GO:0009555 )
anther development( GO:0048653 )
Trait Ontology inflorescence development trait( TO:0000621 )
root development trait( TO:0000656 )
crown root number( TO:0002685 )
male sterility( TO:0000437 )
temperature response trait( TO:0000432 )
Plant Ontology inflorescence development stage( PO:0001083 )
root development stage( PO:0007520 )
anther development stage( PO:0001004 )
pollen development stage( PO:0001007 )
Related Strains
Phenotype images
Last updated
Mar 14, 2022