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Detail of Gene

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Basic Information
CGSNL Gene Symbol MADS47
Gene Symbol Synonym OsMADS47, OsMDP1, MDP, MDP1
Gene Name Synonym MADS box gene47, MADS-domain-contaiing protein1, MADS-domain-containing protein 1, MADS-box transcription factor 47, MADS-DOMAIN-CONTAIING PROTEIN1, MADS domain protein 1
Chromosome No. 3
Explanation AY345221, AC125471, AJ536158. Q5K4R0. PO:0003003; primary root elongation zone. GRO:0007047; 02-seedling ; GRO:0007235; 1.3-coleoptile emergence stage. SHORT VEGETATIVE PHASE (SVP) subfamily. TO:0000816: inflorescence bract anatomy and morphology trait. a downstream gene of OsJMJ706. the candidate gene for qTGW3.1 (QTL for thousand-grain weight).
Trait Class Reproductive organ - panicle
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. AK242211
MSU ID LOC_Os03g08754.1
RAP ID Os03g0186600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Niu Y., Chen T., Wang C., Chen K., Shen C., Chen H., Zhu S., Wu Z., Zheng T., Zhang F., Xu J.
BMC Genomics 2021  22(1)  602
Identification and allele mining of new candidate genes underlying rice grain weight and grain shape by genome-wide association study.
Wang A., Hou Q., Si L., Huang X., Luo J., Lu D., Zhu J., Shangguan Y., Miao J., Xie Y., Wang Y., Zhao Q., Feng Q., Zhou C., Li Y., Fan D., Lu Y., Tian Q., Wang Z., Han B.
Plant Physiol. 2019  180(4)  2077-2090
The PLATZ Transcription Factor GL6 Affects Grain Length and Number in Rice.
Li Y., Li X., Fu D., Wu C.
BMC Plant Biol. 2018  18(1)  348
Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.
Qin R., Zeng D., Yang C., Akhter D., Alamin M., Jin X., Shi C.
Genes (Basel) 2018  9(6) 
<i>LTBSG1</i>, a New Allele of <i>BRD2</i>, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.
Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018  675  285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
Jiang W., Zhou S., Zhang Q., Song H., Zhou D.X., Zhao Y.
J. Exp. Bot. 2017  68(11)  2787-2798
Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.
Liu S., Hua L., Dong S., Chen H., Zhu X., Jiang J., Zhang F., Li Y., Fang X., Chen F.
Plant J. 2015   
OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production.
Liu H., Guo S., Xu Y., Li C., Zhang Z., Zhang D., Xu S., Zhang C., Chong K.
Plant Physiol. 2014  165(1)  160-74
OsmiR396d-regulated OsGRFs Function in Floral Organogenesis in Rice through Binding to their Targets OsJMJ706 and OsCR4.
Yoshida A., Sasao M., Yasuno N., Takagi K., Daimon Y., Chen R., Yamazaki R., Tokunaga H., Kitaguchi Y., Sato Y., Nagamura Y., Ushijima T., Kumamaru T., Iida S., Maekawa M., Kyozuka J.
Proc. Natl. Acad. Sci. U.S.A. 2013  110(2)  767-72
TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition.
Jiang,Y., Bao,L., Jeong,S.Y., Kim,S.K., Xu,C., Li,X. and Zhang,Q.
Plant J. 2011   
XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice
Lee S., Sang Chul Choi, An G.
Plant J. 2008  54(1)  93-105
Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
Sun Q,Zhou DX
Proc. Natl. Acad. Sci. U.S.A. 2008  105  13679-84
Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development.
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
Duan,K., Li,L., Hu,P., Xu,S.P., Xu,Z.H. and Xue,H.W.
Plant J. 2006  47(4)  519-531
A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling.
Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003  44(12)  1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
TextPresso Search Search textpresso for MADS47 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0080019
Gene Ontology brassinosteroid mediated signaling( GO:0009742 )
sequence-specific DNA binding( GO:0043565 )
regulation of transcription, DNA-dependent( GO:0006355 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
inflorescence development( GO:0010229 )
Trait Ontology plant growth hormone sensitivity( TO:0000401 )
leaf angle( TO:0000206 )
root length( TO:0000227 )
floral organ development trait( TO:0006022 )
sterile lemma length( TO:0000240 )
inflorescence development trait( TO:0000621 )
Plant Ontology obsolete primary root elongation zone( PO:0003003 )
leaf collar( PO:0006012 )
root( PO:0009005 )
seed( PO:0009010 )
vascular leaf( PO:0009025 )
stem( PO:0009047 )
inflorescence( PO:0009049 )
coleoptile( PO:0020033 )
stem internode( PO:0020142 )
inflorescence development stage( PO:0001083 )
Related Strains
Phenotype images
Last updated
Mar 22, 2022