Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol BC6
Gene Symbol Synonym Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1
Gene Name Synonym Brittle culm6, Brittle culm 6, Brittle culm-6, Cellulose synthase A catalytic subunit 9 [UDP-forming], Cellulose synthase A catalytic subunit 9, semi-dominant brittle culm 1, fragile culm 16
Allele cesa9, Bc6, bc6, Osfc16, bc88, sdbc1
Chromosome No. 9
Explanation Induced from IR68 by EMS treatment. CELLULOSE SYNTHASE CATALYTIC SUBUNIT. AB527075. EC= A2Z1C8(indica). Q69P51(japonica).GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association. lodging resistance. GO:1901698: response to nitrogen compound. BC88 in Rao et al. 2013. TO:0000993: cellulose content GO:0072593: reactive oxygen species metabolic process. TO:0000825: leaf flexibility.
Trait Class Biochemical character
Vegetative organ - Culm
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK121170
MSU ID LOC_Os09g25490.1
RAP ID Os09g0422500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Zhang R., Hu Z., Wang Y., Hu H., Li F., Li M., Ragauskas A., Xia T., Han H., Tang J., Yu H., Xu B., Peng L.
Nat Commun 2023  14(1)  1100
Single-molecular insights into the breakpoint of cellulose nanofibers assembly during saccharification.
Peng S., Liu Y., Xu Y., Zhao J., Gao P., Liu Q., Yan S., Xiao Y., Zuo S.M., Kang H.
Int J Mol Sci 2023  24(14) 
Genome-Wide Association Study Identifies a Plant-Height-Associated Gene <i>OsPG3</i> in a Population of Commercial Rice Varieties.
Shen Y., Yang G., Miao X., Shi Z.
Rice (N Y) 2023  16(1)  30
OsmiR159 Modulate BPH Resistance Through Regulating G-Protein &#x3b3; Subunit GS3 Gene in Rice.
Jiang H., Ren Y., Guo J., Yang H., Zhu X., Li W., Tao L., Zhan Y., Wang Q., Wu Y., Liu B., Ye Y.
Biotechnol Biofuels Bioprod 2022  15(1)  111
CEF3 is involved in membrane trafficking and essential for secondary cell wall biosynthesis and its mutation enhanced biomass enzymatic saccharification in rice.
Wang F., Cheng Z., Wang J., Zhang F., Zhang B., Luo S., Lei C., Pan T., Wang Y., Zhu Y., Wang M., Chen W., Lin Q., Zhu S., Zhou Y., Zhao Z., Wang J., Guo X., Zhang X., Jiang L., Bao Y., Ren Y., Wan J.
Plant Physiol. 2022  189(2)  567-584
Rice STOMATAL CYTOKINESIS DEFECTIVE2 regulates cell expansion by affecting vesicular trafficking in rice.
Ye Y., Wang S., Wu K., Ren Y., Jiang H., Chen J., Tao L., Fu X., Liu B., Wu Y.
Rice (N Y) 2021  14(1)  19
A Semi-Dominant Mutation in OsCESA9 Improves salt tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice.
Jiang L., Zhong H., Jiang X., Zhang J., Huang R., Liao F., Deng Y., Liu Q., Huang Y., Wang H., Tao Y., Zheng J.
Front Plant Sci 2021  12  814928
Identification and Pleiotropic Effect Analysis of <i>GSE5</i> on Rice Chalkiness and grain shape.
Wang D., Xu T., Yin Z., Wu W., Geng H., Li L., Yang M., Cai H., Lian X.
Front Plant Sci 2020  11  369
Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.
Zhang R., Hu H., Wang Y., Hu Z., Ren S., Li J., He B., Wang Y., Xia T., Chen P., Xie G., Peng L.
J. Exp. Bot. 2020   
A novel rice fragile culm 24 mutant encodes a UDP-glucose epimerase that affects cell wall property and photosynthesis.
Liu S., Tang Y., Ruan N., Dang Z., Huang Y., Miao W., Xu Z., Li F.
Rice (N Y) 2020  13(1)  41
The Rice bz1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.
Xu Y., Hu D., Hou X., Shen J., Liu J., Cen X., Fu J., Li X., Hu H., Xiong L.
New Phytol. 2020  227(2)  498-512
OsTMF attenuates cold tolerance by affecting cell wall properties in rice.
Zhao K., Lin F., Romero-Gamboa SP., Saha P., Goh H.J., An G., Jung K.H., Hazen S.P., Bartley L.E.
Front Plant Sci 2019  10  1275
Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis.
Fan C., Wang G., Wang Y., Zhang R., Wang Y., Feng S., Luo K., Peng L.
Int J Mol Sci 2019  20(20) 
sucrose synthase Enhances Hull Size and grain weight by Regulating Cell Division and Starch Accumulation in Transgenic Rice.
Zhang F., Zeng D., Huang L., Shi Y., Chen T., Zhang F., Zhou Y.
Rice (N Y) 2019  12(1)  80
Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
Li F., Liu S., Xu H., Xu Q.
Biotechnol Biofuels 2018  11  298
A novel FC17/CESA4 mutation causes increased biomass saccharification and lodging resistance by remodeling cell wall in rice.
Ye Y., Wu K., Chen J., Liu Q., Wu Y., Liu B., Fu X.
Rice (N Y) 2018  11(1)  36
OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.
Li F., Xie G., Huang J., Zhang R., Li Y., Zhang M., Wang Y., Li A., Li X., Xia T., Qu C., Hu F., Ragauskas A.J., Peng L.
Plant Biotechnol. J. 2017   
OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.
Zhou S., Jiang W., Long F., Cheng S., Yang W., Zhao Y., Zhou D.X.
Plant Cell 2017  29(5)  1088-1104
Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of crown root Meristem.
Huang P., Yoshida H., Yano K., Kinoshita S., Kawai K., Koketsu E., Hattori M., Takehara S., Huang J., Hirano K., Ordonio R.L., Matsuoka M., Ueguchi-Tanaka M.
J Integr Plant Biol 2017   
OsIDD2, a zinc finger and INDETERMINATE DOMAIN protein, regulates secondary cell wall formation.
Fan C., Feng S., Huang J., Wang Y., Wu L., Li X., Wang L., Tu Y., Xia T., Li J., Cai X., Peng L.
Biotechnol Biofuels 2017  10  221
AtCesA8-driven OsSUS3 expression leads to largely enhanced biomass saccharification and lodging resistance by distinctively altering lignocellulose features in rice.
Schneider R., Tang L., Lampugnani E.R., Barkwill S., Lathe R., Zhang Y., McFarlane H.E., Pesquet E., Niittyla T., Mansfield S.D., Zhou Y., Persson S.
Plant Cell 2017  29(10)  2433-2449
Two Complementary Mechanisms Underpin Cell Wall Patterning during Xylem Vessel Development.
Wu L., Zhang W., Ding Y., Zhang J., Cambula E.D., Weng F., Liu Z., Ding C., Tang S., Chen L., Wang S., Li G.
Front Plant Sci 2017  8  881
Shading Contributes to the Reduction of Stem Mechanical Strength by Decreasing Cell Wall Synthesis in Japonica Rice (Oryza sativa L.).
Zhang W., Wu L., Ding Y., Yao X., Wu X., Weng F., Li G., Liu Z., Tang S., Ding C., Wang S.
J. Plant Res. 2017   
Nitrogen fertilizer application affects lodging resistance by altering secondary cell wall synthesis in japonica rice (Oryza sativa).
Hu K., Cao J., Zhang J., Xia F., Ke Y., Zhang H., Xie W., Liu H., Cui Y., Cao Y., Sun X., Xiao J., Li X., Zhang Q., Wang S.
Nat Plants 2017  3  17009
Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.
Ye Y., Liu B., Zhao M., Wu K., Cheng W., Chen X., Liu Q., Liu Z., Fu X., Wu Y.
Plant Mol. Biol. 2015  89(4-5)  385-401
CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.
Noda S., Koshiba T., Hattori T., Yamaguchi M., Suzuki S., Umezawa T.
Planta 2015  242(3)  589-600
The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
Gutjahr C., Sawers R.J., Marti G., Andrés-Hernández L., Yang S.Y., Casieri L., Angliker H., Oakeley E.J., Wolfender J.L., Abreu-Goodger C., Paszkowski U.
Proc. Natl. Acad. Sci. U.S.A. 2015  112(21)  6754-9
Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi.
Liu G., Zhang K., Ai J., Su Y., Deng X., Hong Y., Wang X.
J. Exp. Bot. 2015   
Patatin-related phospholipase A, pPLAIIIalpha, modulates the longitudinal growth of vegetative tissues and seeds in rice.
Yang C., Li D., Liu X., Ji C., Hao L., Zhao X., Li X., Chen C., Cheng Z., Zhu L.
BMC Plant Biol. 2014  14  158
OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).
Guevara D.R., El-Kereamy A., Yaish M.W., Mei-Bi Y., Rothstein S.J.
PLoS ONE 2014  9(5)  e96158
Functional characterization of the rice UDP-glucose 4-epimerase 1, OsUGE1: a potential role in cell wall carbohydrate partitioning during limiting nitrogen conditions.
Rao Y.C.a, Yang Y.L.b, Xin D.D.a, Li X.J.a, Zhai K.E.a, Ma B.J.a, Pan J.W.a, Qian Q.b, Zeng D.L.b
Chinese Science Bulletin 2013  58  3000-3006
Characterization and cloning of a brittle culm mutant (bc88) in rice (Oryza sativa L.)
Wu B., Zhang B., Dai Y., Zhang L., Shang-Guan K., Peng Y., Zhou Y., Zhu Z.
Plant Physiol. 2012  159(4)  1440-52
Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice.
Dai X,You C,Chen G,Li X,Zhang Q,Wu C
Plant Mol. Biol. 2011  75(4-5)  333-45
OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice.
Kotake T. , Aohara T. , Hirano K. , Sato A. , Kaneko Y. , Tsumuraya Y. , Takatsuji H. , Kawasaki S.
J. Exp. Bot. 2011  62(6)  2053-62
Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls.
Madana M R Ambavaram, Krishnan A., Kurniawan R Trijatmiko, Pereira A.
Plant Physiol. 2011  155(2)  916-31
Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice.
Wang L., Guo K., Li Y., Tu Y., Hu H., Wang B., Cui X., Peng L.
BMC Plant Biol. 2010  10  282
Expression profiling and integrative analysis of the CESA/CSL superfamily in rice.
Shobbar ZS,Oane R,Gamuyao R,De Palma J,Malboobi MA,Karimzadeh G,Javaran MJ,Bennett J
New Phytol. 2008  178  68-79
Abscisic acid regulates gene expression in cortical fiber cells and silica cells of rice shoots.
Tanaka K, Murata K, Yamazaki M, Onosato K, Miyao A, Hirochika H.
Plant Physiol. 2003  133(1)  73-83
Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall.
Singh, K., D.S. Multani and G.S. Khush
RGN 1994  11  91-92.
A new brittle culm mutant in rice.
TextPresso Search Search textpresso for BC6 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060073
Gene Ontology defense response to insect( GO:0002213 )
response to cold( GO:0009409 )
cell wall cellulose biosynthetic process( GO:0052324 )
cellulose biosynthetic process( GO:0030244 )
cellulose synthase (UDP-forming) activity( GO:0016760 )
response to salt stress( GO:0009651 )
integral to membrane( GO:0016021 )
anchored to membrane( GO:0031225 )
symbiosis, encompassing mutualism through parasitism( GO:0044403 )
hemicellulose metabolic process( GO:0010410 )
response to stress( GO:0006950 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
secondary cell wall( GO:0009531 )
protein binding( GO:0005515 )
cell wall organization( GO:0007047 )
plasma membrane( GO:0005886 )
zinc ion binding( GO:0008270 )
response to symbiotic fungus( GO:0009610 )
lignin metabolic process( GO:0009808 )
secondary cell wall biogenesis( GO:0009834 )
membrane( GO:0016020 )
response to light intensity( GO:0009642 )
photoperiodism, flowering( GO:0048573 )
Trait Ontology node shattering( TO:0000061 )
stem strength( TO:0000051 )
leaf shattering( TO:0000108 )
abiotic stress trait( TO:0000168 )
nitrogen sensitivity( TO:0000011 )
light intensity sensitivity( TO:0000460 )
tiller number( TO:0000346 )
days to heading( TO:0000137 )
plant height( TO:0000207 )
root length( TO:0000227 )
salt tolerance( TO:0006001 )
secondary branch number( TO:0000557 )
sugar content( TO:0000333 )
hydrogen peroxide content( TO:0000605 )
proline content( TO:0006002 )
sodium content( TO:0000608 )
cold tolerance( TO:0000303 )
brown planthopper resistance( TO:0000424 )
Plant Ontology root system( PO:0025025 )
inflorescence( PO:0009049 )
vascular leaf( PO:0009025 )
stem( PO:0009047 )
Related Strains
Phenotype images
Last updated
Nov 13, 2023