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Basic Information
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CGSNL Gene Symbol
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BC6
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Gene Symbol Synonym
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Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88, SDBC1, OsSDBC1
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CGSNL Gene Name
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BRITTLE CULM 6
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Gene Name Synonym
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Brittle culm6, Brittle culm 6, Brittle culm-6, Cellulose synthase A catalytic subunit 9 [UDP-forming], Cellulose synthase A catalytic subunit 9, semi-dominant brittle culm 1
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Protein Name
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CELLULOSE SYNTHASE A9
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Allele
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cesa9, Bc6, bc6, Osfc16, bc88, sdbc1
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Chromosome No.
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9
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Explanation
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Induced from IR68 by EMS treatment. CELLULOSE SYNTHASE CATALYTIC SUBUNIT. AB527075. EC=2.4.1.12 A2Z1C8(indica). Q69P51(japonica).GRO:0007044; 06-heading stage ; GRO:0007042; 08-dough stage ; GRO:0007046; 07-milk stage ; GRO:0007048; 04-stem elongation stage ; GRO:0007047; 02-seedling ; GRO:0007049; 03-tillering stage ; GRO:0007148; 05-booting stage ; GRO:0007045; 09-mature grain stage. a secondary cell wall (SCW)-related gene. GO:0036377: arbuscular mycorrhizal association. lodging resistance. GO:1901698: response to nitrogen compound. BC88 in Rao et al. 2013. TO:0000993: cellulose content GO:0072593: reactive oxygen species metabolic process. TO:0000825: leaf flexibility.
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Trait Class
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Biochemical character
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK121170
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MSU ID
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LOC_Os09g25490.1
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RAP ID
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Os09g0422500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang F., Cheng Z., Wang J., Zhang F., Zhang B., Luo S., Lei C., Pan T., Wang Y., Zhu Y., Wang M., Chen W., Lin Q., Zhu S., Zhou Y., Zhao Z., Wang J., Guo X., Zhang X., Jiang L., Bao Y., Ren Y., Wan J.
Plant Physiol. 2022 189(2) 567-584
Rice STOMATAL CYTOKINESIS DEFECTIVE2 regulates cell expansion by affecting vesicular trafficking in rice.
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Jiang H., Ren Y., Guo J., Yang H., Zhu X., Li W., Tao L., Zhan Y., Wang Q., Wu Y., Liu B., Ye Y.
Biotechnol Biofuels Bioprod 2022 15(1) 111
CEF3 is involved in membrane trafficking and essential for secondary cell wall biosynthesis and its mutation enhanced biomass enzymatic saccharification in rice.
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Ye Y., Wang S., Wu K., Ren Y., Jiang H., Chen J., Tao L., Fu X., Liu B., Wu Y.
Rice (N Y) 2021 14(1) 19
A Semi-Dominant Mutation in OsCESA9 Improves salt tolerance and Favors Field Straw Decay Traits by Altering Cell Wall Properties in Rice.
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Jiang L., Zhong H., Jiang X., Zhang J., Huang R., Liao F., Deng Y., Liu Q., Huang Y., Wang H., Tao Y., Zheng J.
Front Plant Sci 2021 12 814928
Identification and Pleiotropic Effect Analysis of <i>GSE5</i> on Rice Chalkiness and grain shape.
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Liu S., Tang Y., Ruan N., Dang Z., Huang Y., Miao W., Xu Z., Li F.
Rice (N Y) 2020 13(1) 41
The Rice bz1 Locus Is Required for Glycosylation of Arabinogalactan Proteins and Galactolipid and Plays a Role in both Mechanical Strength and Leaf Color.
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Xu Y., Hu D., Hou X., Shen J., Liu J., Cen X., Fu J., Li X., Hu H., Xiong L.
New Phytol. 2020 227(2) 498-512
OsTMF attenuates cold tolerance by affecting cell wall properties in rice.
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Wang D., Xu T., Yin Z., Wu W., Geng H., Li L., Yang M., Cai H., Lian X.
Front Plant Sci 2020 11 369
Overexpression of OsMYB305 in Rice Enhances the Nitrogen Uptake Under Low-Nitrogen Condition.
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Zhang R., Hu H., Wang Y., Hu Z., Ren S., Li J., He B., Wang Y., Xia T., Chen P., Xie G., Peng L.
J. Exp. Bot. 2020
A novel rice fragile culm 24 mutant encodes a UDP-glucose epimerase that affects cell wall property and photosynthesis.
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Zhao K., Lin F., Romero-Gamboa SP., Saha P., Goh H.J., An G., Jung K.H., Hazen S.P., Bartley L.E.
Front Plant Sci 2019 10 1275
Rice Genome-Scale Network Integration Reveals Transcriptional Regulators of Grass Cell Wall Synthesis.
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Zhang F., Zeng D., Huang L., Shi Y., Chen T., Zhang F., Zhou Y.
Rice (N Y) 2019 12(1) 80
Stress-Activated Protein Kinase OsSAPK9 Regulates Tolerance to Salt Stress and Resistance to Bacterial Blight in Rice.
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Fan C., Wang G., Wang Y., Zhang R., Wang Y., Feng S., Luo K., Peng L.
Int J Mol Sci 2019 20(20)
sucrose synthase Enhances Hull Size and grain weight by Regulating Cell Division and Starch Accumulation in Transgenic Rice.
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Li F., Liu S., Xu H., Xu Q.
Biotechnol Biofuels 2018 11 298
A novel FC17/CESA4 mutation causes increased biomass saccharification and lodging resistance by remodeling cell wall in rice.
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Ye Y., Wu K., Chen J., Liu Q., Wu Y., Liu B., Fu X.
Rice (N Y) 2018 11(1) 36
OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.
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Fan C., Feng S., Huang J., Wang Y., Wu L., Li X., Wang L., Tu Y., Xia T., Li J., Cai X., Peng L.
Biotechnol Biofuels 2017 10 221
AtCesA8-driven OsSUS3 expression leads to largely enhanced biomass saccharification and lodging resistance by distinctively altering lignocellulose features in rice.
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Hu K., Cao J., Zhang J., Xia F., Ke Y., Zhang H., Xie W., Liu H., Cui Y., Cao Y., Sun X., Xiao J., Li X., Zhang Q., Wang S.
Nat Plants 2017 3 17009
Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.
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Li F., Xie G., Huang J., Zhang R., Li Y., Zhang M., Wang Y., Li A., Li X., Xia T., Qu C., Hu F., Ragauskas A.J., Peng L.
Plant Biotechnol. J. 2017
OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.
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Zhang W., Wu L., Ding Y., Yao X., Wu X., Weng F., Li G., Liu Z., Tang S., Ding C., Wang S.
J. Plant Res. 2017
Nitrogen fertilizer application affects lodging resistance by altering secondary cell wall synthesis in japonica rice (Oryza sativa).
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Zhou S., Jiang W., Long F., Cheng S., Yang W., Zhao Y., Zhou D.X.
Plant Cell 2017 29(5) 1088-1104
Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of crown root Meristem.
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Huang P., Yoshida H., Yano K., Kinoshita S., Kawai K., Koketsu E., Hattori M., Takehara S., Huang J., Hirano K., Ordonio R.L., Matsuoka M., Ueguchi-Tanaka M.
J Integr Plant Biol 2017
OsIDD2, a zinc finger and INDETERMINATE DOMAIN protein, regulates secondary cell wall formation.
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Schneider R., Tang L., Lampugnani E.R., Barkwill S., Lathe R., Zhang Y., McFarlane H.E., Pesquet E., Niittyla T., Mansfield S.D., Zhou Y., Persson S.
Plant Cell 2017 29(10) 2433-2449
Two Complementary Mechanisms Underpin Cell Wall Patterning during Xylem Vessel Development.
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Wu L., Zhang W., Ding Y., Zhang J., Cambula E.D., Weng F., Liu Z., Ding C., Tang S., Chen L., Wang S., Li G.
Front Plant Sci 2017 8 881
Shading Contributes to the Reduction of Stem Mechanical Strength by Decreasing Cell Wall Synthesis in Japonica Rice (Oryza sativa L.).
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Liu G., Zhang K., Ai J., Su Y., Deng X., Hong Y., Wang X.
J. Exp. Bot. 2015
Patatin-related phospholipase A, pPLAIIIalpha, modulates the longitudinal growth of vegetative tissues and seeds in rice.
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Ye Y., Liu B., Zhao M., Wu K., Cheng W., Chen X., Liu Q., Liu Z., Fu X., Wu Y.
Plant Mol. Biol. 2015 89(4-5) 385-401
CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.
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Noda S., Koshiba T., Hattori T., Yamaguchi M., Suzuki S., Umezawa T.
Planta 2015 242(3) 589-600
The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
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Gutjahr C., Sawers R.J., Marti G., Andrés-Hernández L., Yang S.Y., Casieri L., Angliker H., Oakeley E.J., Wolfender J.L., Abreu-Goodger C., Paszkowski U.
Proc. Natl. Acad. Sci. U.S.A. 2015 112(21) 6754-9
Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi.
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Yang C., Li D., Liu X., Ji C., Hao L., Zhao X., Li X., Chen C., Cheng Z., Zhu L.
BMC Plant Biol. 2014 14 158
OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).
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Guevara D.R., El-Kereamy A., Yaish M.W., Mei-Bi Y., Rothstein S.J.
PLoS ONE 2014 9(5) e96158
Functional characterization of the rice UDP-glucose 4-epimerase 1, OsUGE1: a potential role in cell wall carbohydrate partitioning during limiting nitrogen conditions.
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Rao Y.C.a, Yang Y.L.b, Xin D.D.a, Li X.J.a, Zhai K.E.a, Ma B.J.a, Pan J.W.a, Qian Q.b, Zeng D.L.b
Chinese Science Bulletin 2013 58 3000-3006
Characterization and cloning of a brittle culm mutant (bc88) in rice (Oryza sativa L.)
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Wu B., Zhang B., Dai Y., Zhang L., Shang-Guan K., Peng Y., Zhou Y., Zhu Z.
Plant Physiol. 2012 159(4) 1440-52
Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice.
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Madana M R Ambavaram, Krishnan A., Kurniawan R Trijatmiko, Pereira A.
Plant Physiol. 2011 155(2) 916-31
Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice.
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Kotake T. , Aohara T. , Hirano K. , Sato A. , Kaneko Y. , Tsumuraya Y. , Takatsuji H. , Kawasaki S.
J. Exp. Bot. 2011 62(6) 2053-62
Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls.
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Dai X,You C,Chen G,Li X,Zhang Q,Wu C
Plant Mol. Biol. 2011 75(4-5) 333-45
OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice.
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Wang L., Guo K., Li Y., Tu Y., Hu H., Wang B., Cui X., Peng L.
BMC Plant Biol. 2010 10 282
Expression profiling and integrative analysis of the CESA/CSL superfamily in rice.
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Shobbar ZS,Oane R,Gamuyao R,De Palma J,Malboobi MA,Karimzadeh G,Javaran MJ,Bennett J
New Phytol. 2008 178 68-79
Abscisic acid regulates gene expression in cortical fiber cells and silica cells of rice shoots.
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Tanaka K, Murata K, Yamazaki M, Onosato K, Miyao A, Hirochika H.
Plant Physiol. 2003 133(1) 73-83
Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall.
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Singh, K., D.S. Multani and G.S. Khush
RGN 1994 11 91-92.
A new brittle culm mutant in rice.
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TextPresso Search
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Search textpresso for BC6
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0060073
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Ontologies
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Gene Ontology
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response to cold( GO:0009409 )
cell wall cellulose biosynthetic process( GO:0052324 )
cellulose biosynthetic process( GO:0030244 )
cellulose synthase (UDP-forming) activity( GO:0016760 )
response to salt stress( GO:0009651 )
integral to membrane( GO:0016021 )
anchored to membrane( GO:0031225 )
symbiosis, encompassing mutualism through parasitism( GO:0044403 )
hemicellulose metabolic process( GO:0010410 )
response to stress( GO:0006950 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
secondary cell wall( GO:0009531 )
protein binding( GO:0005515 )
cell wall organization( GO:0007047 )
plasma membrane( GO:0005886 )
zinc ion binding( GO:0008270 )
response to symbiotic fungus( GO:0009610 )
lignin metabolic process( GO:0009808 )
secondary cell wall biogenesis( GO:0009834 )
membrane( GO:0016020 )
response to light intensity( GO:0009642 )
photoperiodism, flowering( GO:0048573 )
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Trait Ontology
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node shattering( TO:0000061 )
stem strength( TO:0000051 )
leaf shattering( TO:0000108 )
abiotic stress trait( TO:0000168 )
nitrogen sensitivity( TO:0000011 )
light intensity sensitivity( TO:0000460 )
tiller number( TO:0000346 )
days to heading( TO:0000137 )
plant height( TO:0000207 )
root length( TO:0000227 )
salt tolerance( TO:0006001 )
secondary branch number( TO:0000557 )
sugar content( TO:0000333 )
hydrogen peroxide content( TO:0000605 )
proline content( TO:0006002 )
sodium content( TO:0000608 )
cold tolerance( TO:0000303 )
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Plant Ontology
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root system( PO:0025025 )
inflorescence( PO:0009049 )
vascular leaf( PO:0009025 )
stem( PO:0009047 )
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Related Strains
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Phenotype images
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Last updated
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Jan 11, 2023
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