Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol MADS27
Gene Symbol Synonym OsMADS27, MADS-27a, OsSTA66, OsMADS27a
Gene Name Synonym MADS box gene27, MADS-box transcription factor 27
Allele OsMADS27aR, osmads27-1, osmads27-2
Chromosome No. 2
Explanation Q6EP49. CT835409. AY551923. one of the miR444 target genes. a mature anther-preferentially expressed gene. MADS-27a in Yang et al. 2014. OsMADS27a in Wang et al. 2016. ortholog of ZmMADS2. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development. TO:0020098: nitrate sensitivity. GO:1901002: positive regulation of response to salt stress. GO:0098771: inorganic ion homeostasis. GO:1902882: regulation of response to oxidative stress.
Trait Class Vegetative organ - Root
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. CT835409
MSU ID LOC_Os02g36924.1
RAP ID Os02g0579600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Alfatih A., Zhang J., Song Y., Jan S.U., Zhang Z.S., Xia J.Q., Zhang Z.Y., Nazish T., Wu J., Zhao P.X., Xiang C.B.
Plant Commun 2022    100458
Nitrate-responsive OsMADS27 promotes salt tolerance in rice.
Zhao N., Zhang K., Wang C., Yan H., Liu Y., Xu W., Su Z.
Front Genet 2020  11  766
Systematic Analysis of Differential H3K27me3 and H3K4me3 Deposition in Callus and Seedling Reveals the Epigenetic Regulatory Mechanisms Involved in Callus Formation in Rice.
Jiao X., Wang H., Yan J., Kong X., Liu Y., Chu J., Chen X., Fang R., Yan Y.
Plant Physiol. 2020  182(3)  1454-1466
Promotion of BR Biosynthesis by miR444 Is Required for Ammonium-Triggered Inhibition of Root Growth.
Wei J., Zheng Y., Feng H., Qu H., Fan X., Yamaji N., Ma J.F., Xu G.
J. Exp. Bot. 2018  69(5)  1095-1107
OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.
Wang H., Jiao X., Kong X., Hamera S., Wu Y., Chen X., Fang R., Yan Y.
Plant Physiol. 2016  170(4)  2365-77
A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
Liu X., Zhou S., Wang W., Ye Y., Zhao Y., Xu Q., Zhou C., Tan F., Cheng S., Zhou D.X.
Plant Cell 2015  27(5)  1428-44
Regulation of histone methylation and reprogramming of gene expression in the rice inflorescence meristem.
Ling S., Chen C., Wang Y., Sun X., Lu Z., Ouyang Y., Yao J.
BMC Genomics 2015  16  101
The mature anther-preferentially expressed genes are associated with pollen fertility, pollen germination and anther dehiscence in rice.
Yan Y., Wang H., Hamera S., Chen X., Fang R.
Plant J. 2014  78(1)  44-55
miR444a has multiple functions in the rice nitrate-signaling pathway.
Puig J., Meynard D., Khong G.N., Pauluzzi G., Guiderdoni E., Gantet P.
Gene Expr. Patterns 2013  13(5-6)  160-170
Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
Zhang L., Cheng Z., Qin R., Qiu Y., Wang J.L., Cui X., Gu L., Zhang X., Guo X., Wang D., Jiang L., Wu C.Y., Wang H., Cao X., Wan J.
Plant Cell 2012  24(11)  4407-21
Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.
Thangasamy S., Cian-Ling Guo, Ming-Hsiang Chuang, Ming-Hsing Lai, Chen J., Guang-Yuh Jauh
New Phytol. 2011  189(3)  869-82
Rice SIZ1, a SUMO E3 ligase, controls spikelet fertility through regulation of anther dehiscence.
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003  44(12)  1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
TextPresso Search Search textpresso for MADS27 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology regulation of nitrogen utilization( GO:0006808 )
response to oxidative stress( GO:0006979 )
potassium ion homeostasis( GO:0055075 )
response to salt stress( GO:0009651 )
response to nitrate( GO:0010167 )
negative regulation of brassinosteroid biosynthetic process( GO:0010423 )
brassinosteroid mediated signaling( GO:0009742 )
root development( GO:0048364 )
response to ammonium ion( GO:0060359 )
nucleus( GO:0005634 )
transcription factor activity( GO:0003700 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
transcription( GO:0006350 )
cellular response to nitrogen starvation( GO:0006995 )
cellular response to phosphate starvation( GO:0016036 )
defense response to virus( GO:0051607 )
Trait Ontology abiotic stress trait( TO:0000168 )
viral disease resistance( TO:0000148 )
root length( TO:0000227 )
root development trait( TO:0000656 )
brassinosteroid content( TO:0002676 )
salt tolerance( TO:0006001 )
grain yield( TO:0000396 )
oxidative stress( TO:0002657 )
sodium content( TO:0000608 )
potassium content( TO:0000609 )
relative yield( TO:0000153 )
grain yield per plant( TO:0000449 )
tiller number( TO:0000346 )
panicle number( TO:0000152 )
grain number per plant( TO:0000440 )
primary branch number( TO:0000547 )
Plant Ontology anther( PO:0009066 )
root( PO:0009005 )
root development stage( PO:0007520 )
leaf( PO:0025034 )
leaf sheath( PO:0020104 )
root stele( PO:0020124 )
Related Strains
Phenotype images
Last updated
Mar 12, 2023