Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol MADS25
Gene Symbol Synonym OsMADS25
Gene Name Synonym MADS box gene25, MADS-box transcription factor 25
Chromosome No. 4
Explanation Q84NC5. GO:0072593: reactive oxygen species metabolic process. GO:1902457: negative regulation of stomatal opening. GO:1900458: negative regulation of brassinosteroid mediated signaling pathway. GO:2000280: regulation of root development.
Trait Class Vegetative organ - Root
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK102927
MSU ID LOC_Os04g23910.1
RAP ID Os04g0304400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Jiao X., Wang H., Yan J., Kong X., Liu Y., Chu J., Chen X., Fang R., Yan Y.
Plant Physiol. 2020  182(3)  1454-1466
Promotion of BR Biosynthesis by miR444 Is Required for Ammonium-Triggered Inhibition of Root Growth.
Chen R., Xu N., Yu B., Wu Q., Li X., Wang G., Huang J.
Plant Sci. 2020  298  110575
The WUSCHEL-related homeobox transcription factor OsWOX4 controls the primary root elongation by activating OsAUX1 in rice.
Wei J., Zheng Y., Feng H., Qu H., Fan X., Yamaji N., Ma J.F., Xu G.
J. Exp. Bot. 2018  69(5)  1095-1107
OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.
Xu N., Chu Y., Chen H., Li X., Wu Q., Jin L., Wang G., Huang J.
PLoS Genet. 2018  14(10)  e1007662
Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.
Nayar S., Kapoor M., Kapoor S.
J. Exp. Bot. 2014  65(18)  5339-50
Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
Puig J., Meynard D., Khong G.N., Pauluzzi G., Guiderdoni E., Gantet P.
Gene Expr. Patterns 2013  13(5-6)  160-170
Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003  44(12)  1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
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DB Reference
Gramene ID -
Gene Ontology root development( GO:0048364 )
brassinosteroid mediated signaling( GO:0009742 )
negative regulation of brassinosteroid biosynthetic process( GO:0010423 )
response to ammonium ion( GO:0060359 )
nucleus( GO:0005634 )
transcription factor activity( GO:0003700 )
regulation of transcription, DNA-dependent( GO:0006355 )
transcription( GO:0006350 )
sequence-specific DNA binding( GO:0043565 )
response to salt stress( GO:0009651 )
abscisic acid mediated signaling( GO:0009738 )
response to hydrogen peroxide( GO:0042542 )
response to oxidative stress( GO:0006979 )
response to abscisic acid stimulus( GO:0009737 )
positive regulation of auxin mediated signaling pathway( GO:0010929 )
positive regulation of unidimensional cell growth( GO:0051512 )
Trait Ontology salt tolerance( TO:0006001 )
abscisic acid sensitivity( TO:0000615 )
hydrogen peroxide content( TO:0000605 )
root length( TO:0000227 )
lateral root number( TO:0001013 )
oxidative stress( TO:0002657 )
proline content( TO:0006002 )
auxin sensitivity( TO:0000163 )
root development trait( TO:0000656 )
brassinosteroid content( TO:0002676 )
Plant Ontology root( PO:0009005 )
root development stage( PO:0007520 )
Related Strains
Phenotype images
Last updated
Nov 15, 2021