Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol COG1
Gene Symbol Synonym OsMADS17, MADS17, NMADS3, RMADS213, nmads3
Gene Name Synonym MADS box gene17, MADS-box transcription factor 17
Chromosome No. 4
Explanation Q7XUN2. AF109153. AF095646. GQ496628, GQ496629, GQ496630 (wild rice species). the candidate gene for qGL4/qRLW4 (QTL for grain length and ratio of length-to-width).
Trait Class Reproductive organ - panicle
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Reproductive organ - Spikelet, flower, glume, awn
cDNA Accession No. AK070540
MSU ID LOC_Os04g49150.1
RAP ID Os04g0580700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Li Y., Wu S., Huang Y., Ma X., Tan L., Liu F., Lv Q., Zhu Z., Hu M., Fu Y., Zhang K., Gu P., Xie D., Sun H., Sun C.
Nat Commun 2023  14(1)  3098
OsMADS17 simultaneously increases grain number and grain weight in rice.
Mohanty B.
Front Genet 2021  12  639654
Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
Niu Y., Chen T., Wang C., Chen K., Shen C., Chen H., Zhu S., Wu Z., Zheng T., Zhang F., Xu J.
BMC Genomics 2021  22(1)  602
Identification and allele mining of new candidate genes underlying rice grain weight and grain shape by genome-wide association study.
Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018  675  285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
Bai X., Huang Y., Mao D., Wen M., Zhang L., Xing Y.
Sci Rep 2016  6  19022
Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
Nayar S., Kapoor M., Kapoor S.
J. Exp. Bot. 2014  65(18)  5339-50
Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
Duan Y., Xing Z., Diao Z., Xu W., Li S., Du X., Wu G., Wang C., Lan T., Meng Z., Liu H., Wang F., Wu W., Xue Y.
Plant Mol. Biol. 2012  80(4-5)  429-42
Characterization of OsMADS6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
Zhang L., Cheng Z., Qin R., Qiu Y., Wang J.L., Cui X., Gu L., Zhang X., Guo X., Wang D., Jiang L., Wu C.Y., Wang H., Cao X., Wan J.
Plant Cell 2012  24(11)  4407-21
Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.
Ohmori S,Kimizu M,Sugita M,Miyao A,Hirochika H,Uchida E,Nagato Y,Yoshida H
Plant Cell 2009  21(10)  3008-25
MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice.
Reinheimer R,Kellogg EA
Plant Cell 2009  21(9)  2591-605
Evolution of AGL6-like MADS box genes in grasses (Poaceae): ovule expression is ancient and palea expression is new.
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003  44(12)  1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
Yuan,Z., Qian,X., Liu,J., Liu,J., Qian,M., Yang,J. and Liu,J.
Prog. Nat. Sci. 2000  10  357-363
Cloning and characterization of two cDNAs encoding rice MADS box protein
Moon,Y.H., Kang,H.G., Jung,J.Y., Jeon,J.S., Sung,S.K. and An,G.
Plant Physiol. 1999  120(4)  1193-1204
Determination of the motif responsible for interaction between the rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system.
TextPresso Search Search textpresso for COG1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to deep water( GO:0030912 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
protein binding( GO:0005515 )
inflorescence development( GO:0010229 )
Trait Ontology inflorescence development trait( TO:0000621 )
submergence tolerance( TO:0000524 )
grain number( TO:0002759 )
grain weight( TO:0000590 )
grain yield( TO:0000396 )
Plant Ontology inflorescence development stage( PO:0001083 )
primordium( PO:0025127 )
Related Strains
Phenotype images
Last updated
Sep 6, 2023