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Basic Information
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CGSNL Gene Symbol
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COG1
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Gene Symbol Synonym
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OsMADS17, MADS17, NMADS3, RMADS213, nmads3
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CGSNL Gene Name
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CONTROL OF GRAIN YIELD 1
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Gene Name Synonym
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MADS box gene17, MADS-box transcription factor 17
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Protein Name
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MADS-BOX TRANSCRIPTION FACTOR 17
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Allele
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osmads17
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Chromosome No.
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4
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Explanation
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Q7XUN2. AF109153. AF095646. GQ496628, GQ496629, GQ496630 (wild rice species). the candidate gene for qGL4/qRLW4 (QTL for grain length and ratio of length-to-width). GO:1901959: positive regulation of cutin biosynthetic process. PO:0030123: panicle inflorescence.
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Trait Class
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Reproductive organ - panicle
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Reproductive organ - Spikelet, flower, glume, awn
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK070540
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MSU ID
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LOC_Os04g49150.1
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RAP ID
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Os04g0580700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Yang C., Shen S., Zhan C., Li Y., Zhang R., Lv Y., Yang Z., Zhou J., Shi Y., Liu X., Shi J., Zhang D., Fernie A.R., Luo J.
Nat Commun 2024 15(1) 6663
Variation in a Poaceae-conserved fatty acid metabolic gene cluster controls rice yield by regulating male fertility.
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Li Y., Wu S., Huang Y., Ma X., Tan L., Liu F., Lv Q., Zhu Z., Hu M., Fu Y., Zhang K., Gu P., Xie D., Sun H., Sun C.
Nat Commun 2023 14(1) 3098
OsMADS17 simultaneously increases grain number and grain weight in rice.
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Niu Y., Chen T., Wang C., Chen K., Shen C., Chen H., Zhu S., Wu Z., Zheng T., Zhang F., Xu J.
BMC Genomics 2021 22(1) 602
Identification and allele mining of new candidate genes underlying rice grain weight and grain shape by genome-wide association study.
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Mohanty B.
Front Genet 2021 12 639654
Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
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Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018 675 285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
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Bai X., Huang Y., Mao D., Wen M., Zhang L., Xing Y.
Sci Rep 2016 6 19022
Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
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Nayar S., Kapoor M., Kapoor S.
J. Exp. Bot. 2014 65(18) 5339-50
Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
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Duan Y., Xing Z., Diao Z., Xu W., Li S., Du X., Wu G., Wang C., Lan T., Meng Z., Liu H., Wang F., Wu W., Xue Y.
Plant Mol. Biol. 2012 80(4-5) 429-42
Characterization of OsMADS6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
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Zhang L., Cheng Z., Qin R., Qiu Y., Wang J.L., Cui X., Gu L., Zhang X., Guo X., Wang D., Jiang L., Wu C.Y., Wang H., Cao X., Wan J.
Plant Cell 2012 24(11) 4407-21
Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.
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Ohmori S,Kimizu M,Sugita M,Miyao A,Hirochika H,Uchida E,Nagato Y,Yoshida H
Plant Cell 2009 21(10) 3008-25
MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice.
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Reinheimer R,Kellogg EA
Plant Cell 2009 21(9) 2591-605
Evolution of AGL6-like MADS box genes in grasses (Poaceae): ovule expression is ancient and palea expression is new.
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Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007 8 242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
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Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003 44(12) 1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
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Yuan,Z., Qian,X., Liu,J., Liu,J., Qian,M., Yang,J. and Liu,J.
Prog. Nat. Sci. 2000 10 357-363
Cloning and characterization of two cDNAs encoding rice MADS box protein
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Moon,Y.H., Kang,H.G., Jung,J.Y., Jeon,J.S., Sung,S.K. and An,G.
Plant Physiol. 1999 120(4) 1193-1204
Determination of the motif responsible for interaction between the rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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floral organ development( GO:0048437 )
tapetal layer development( GO:0048658 )
pollen development( GO:0009555 )
anther development( GO:0048653 )
response to deep water( GO:0030912 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
protein binding( GO:0005515 )
inflorescence development( GO:0010229 )
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Trait Ontology
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inflorescence development trait( TO:0000621 )
submergence tolerance( TO:0000524 )
grain number( TO:0002759 )
grain weight( TO:0000590 )
grain yield( TO:0000396 )
floral organ development trait( TO:0006022 )
grain yield per plant( TO:0000449 )
pollen abortion type( TO:0000218 )
anther length( TO:0000531 )
anther color( TO:0000187 )
male sterility( TO:0000437 )
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Plant Ontology
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inflorescence development stage( PO:0001083 )
primordium( PO:0025127 )
floral organ primordium( PO:0025477 )
anther development stage( PO:0001004 )
pollen development stage( PO:0001007 )
inflorescence( PO:0009049 )
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Related Strains
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Phenotype images
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Last updated
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Nov 21, 2024
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