Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol RAP1A
Gene Symbol Synonym OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
Gene Name Synonym MADS-box transcription factor 15, Protein APETALA1-like A, degenerative palea, MADS box gene15
Allele dep, Osmads15
Chromosome No. 7
Explanation AP1-like MADS box protein. Q6Q9I2. AB003325, AF058698. a rice APETALA1 ortholog (an ortholog of Arabidopsis AP1).
Trait Class Tolerance and resistance - Stress tolerance
Reproductive organ
Reproductive organ - Spikelet, flower, glume, awn
Reproductive organ - Heading date
Expression spikelet - Sp3 - Formation of lemma primordium
spikelet - Sp4 - Formation of palea primordium
spikelet - Sp5 - Formation of lodicule primordia
cDNA Accession No. AK072683
MSU ID LOC_Os07g01820.1
RAP ID Os07g0108900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Mao X., Zheng X., Chen W., Li C.
Int J Mol Sci 2023  24(16) 
Characterization and Gene Mapping of an Open-Glume <i>Oryza sativa</i> L. Mutant.
Kannan P., Chongloi G.L., Majhi B.B., Basu D., Veluthambi K., Vijayraghavan U.
Planta 2021  253(2)  39
Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting.
Qu L., Chu Y.J., Lin W.H., Xue H.W.
PLoS Genet. 2021  17(12)  e1009905
A secretory Phospholipase D hydrolyzes phosphatidylcholine to suppress rice heading time.
Cerise M., Giaume F., Galli M., Khahani B., Lucas J., Podico F., Tavakol E., Parcy F., Gallavotti A., Brambilla V., Fornara F.
New Phytol. 2021  229(1)  429-443
OsFD4 promotes the rice floral transition via florigen activation complex formation in the shoot apical meristem.
Osnato M., Matias-Hernandez L., Aguilar-Jaramillo AE., Kater M.M., Pelaz S.
Plant Physiol. 2020  183(4)  1663-1680
Genes of the <i>RAV</i> Family Control Heading Date and Carpel Development in Rice.
Phule A.S., Barbadikar K.M., Maganti S.M., Seguttuvel P., Subrahmanyam D., Babu MBBP., Kumar P.A.
Sci Rep 2019  9(1)  5235
RNA-seq reveals the involvement of key genes for aerobic adaptation in rice.
Cai M., Chen S., Wu M., Zheng T., Zhou L., Li C., Zhang H., Wang J., Xu X., Chai J., Ren Y., Guo X., Zhang X., Lei C., Cheng Z., Wang J., Jiang L., Zhai H., Wang H., Zhu S., Wan J.
Plant Cell Rep. 2019  38(5)  521-532
Early heading 7 interacts with DTH8, and regulates flowering time in rice.
Yang Z., Liu L., Sun L., Yu P., Zhang P., Abbas A., Xiang X., Wu W., Zhang Y., Cao L., Cheng S.
Plant Mol. Biol. 2019  99(1-2)  175-191
osms1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.
Fang M., Zhou Z., Zhou X., Yang H., Li M., Li H.
PeerJ 2019  7  e6422
Overexpression of <i>OsFTL10</i> induces early flowering and improves drought tolerance in <i>Oryza sativa</i> L.
Yang C., Liu X., Li D., Zhu X., Wei Z., Feng Z., Zhang L., He J., Mou C., Jiang L., Wan J.
Plant Sci. 2019  288  110239
OsLUGL is involved in the regulating auxin level and OsARFs expression in rice (Oryza sativa L.).
Yin X., Liu X., Xu B., Lu P., Dong T., Yang D., Ye T., Feng Y.Q., Wu Y.
J. Exp. Bot. 2019  70(15)  3895-3909
OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the abscisic acid response in rice.
Kaneko-Suzuki M., Kurihara-Ishikawa R., Okushita-Terakawa C., Kojima C., Nagano-Fujiwara M., Ohki I., Tsuji H., Shimamoto K., Taoka K.I.
Plant Cell Physiol. 2018  59(3)  458-468
TFL1-Like Proteins in Rice Antagonize Rice FT-Like Protein in Inflorescence Development by Competition for Complex Formation with 14-3-3 and FD.
Wu W., Zhang Y., Zhang M., Zhan X., Shen X., Yu P., Chen D., Liu Q., Sinumporn S., Hussain K., Cheng S., Cao L.
Biochem. Biophys. Res. Commun. 2018  495(1)  1349-1355
The RICE CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.
Wu W., Zheng X.M., Chen D., Zhang Y., Ma W., Zhang H., Sun L., Yang Z., Zhao C., Zhan X., Shen X., Yu P., Fu Y., Zhu S., Cao L., Cheng S.
Plant Sci. 2017  260  60-69
OsCOL16, encoding a CONSTANS-like protein, represses flowering by up-regulating Ghd7 expression in rice.
Yu H., Ruan B., Wang Z., Ren D., Zhang Y., Leng Y., Zeng D., Hu J., Zhang G., Zhu L., Gao Z., Chen G., Guo L., Chen W., Qian Q.
Front Plant Sci 2017  8  486
Fine Mapping of a Novel defective glume 1 (dg1) Mutant, Which Affects Vegetative and Spikelet Development in Rice.
Song S., Chen Y., Liu L., Wang Y., Bao S., Zhou X., Teo Z.W., Mao C., Gan Y., Yu H.
Plant Cell 2017  29(3)  491-507
OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDKgamma4.
Brambilla V., Martignago D., Goretti D., Cerise M., Somssich M., de Rosa M., Galbiati F., Shrestha R., Lazzaro F., Simon R., Fornara F.
Plant Cell 2017  29(11)  2801-2816
Antagonistic Transcription Factor Complexes Modulate the Floral Transition in Rice.
Zhang T., Li Y., Ma L., Sang X., Ling Y., Wang Y., Yu P., Zhuang H., Huang J., Wang N., Zhao F., Zhang C., Yang Z., Fang L., He G.
Proc. Natl. Acad. Sci. U.S.A. 2017   
LATERAL FLORET 1 induced the three-florets spikelet in rice.
Liu X., Zhou S., Wang W., Ye Y., Zhao Y., Xu Q., Zhou C., Tan F., Cheng S., Zhou D.X.
Plant Cell 2015  27(5)  1428-44
Regulation of histone methylation and reprogramming of gene expression in the rice inflorescence meristem.
Tamaki S., Tsuji H., Matsumoto A., Fujita A., Shimatani Z., Terada R., Sakamoto T., Kurata T., Shimamoto K.
Proc. Natl. Acad. Sci. U.S.A. 2015  112(8)  E901-10
FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.
Ren D., Rao Y., Wu L., Xu Q., Li Z., Yu H., Zhang Y., Leng Y., Hu J., Zhu L., Gao Z., Dong G., Zhang G., Guo L., Zeng D., Qian Q.
J Integr Plant Biol 2015   
The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.
Marathi B., Jena K.K.
Euphytica 2014  201  1-14
Floral traits to enhance outcrossing for higher hybrid seed production in rice: present status and future prospects
Wu W., Zheng X.M., Lu G., Zhong Z., Gao H., Chen L., Wu C., Wang H.J., Wang Q., Zhou K., Wang J.L., Wu F., Zhang X., Guo X., Cheng Z., Lei C., Lin Q., Jiang L., Wang H., Ge S., Wan J.
Proc. Natl. Acad. Sci. U.S.A. 2013  110(8)  2775-80
Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia.
Abiko M., Maeda H., Tamura K., Hara-Nishimura I., Okamoto T.
J. Exp. Bot. 2013  64(7)  1927-40
Gene expression profiles in rice gametes and zygotes: identification of gamete-enriched genes and up- or down-regulated genes in zygotes after fertilization.
Tsuji H., Nakamura H., Taoka K., Shimamoto K.
Plant Cell Physiol. 2013  54(3)  385-97
Functional diversification of FD transcription factors in rice, components of florigen activation complexes.
Taoka K., Ohki I., Tsuji H., Kojima C., Shimamoto K.
Trends Plant Sci. 2013  18(5)  287-94
Structure and function of florigen and the receptor complex.
Kobayashi K., Yasuno N., Sato Y., Yoda M., Yamazaki R., Kimizu M., Yoshida H., Nagamura Y., Kyozuka J.
Plant Cell 2012  24(5)  1848-59
inflorescence meristem Identity in Rice Is Specified by Overlapping Functions of Three AP1/FUL-Like MADS Box Genes and PAP2, a SEPALLATA MADS Box Gene.
Taoka K., Ohki I., Tsuji H., Furuita K., Hayashi K., Yanase T., Yamaguchi M., Nakashima C., Purwestri Y.A., Tamaki S., Ogaki Y., Shimada C., Nakagawa A., Kojima C., Shimamoto K.
Nature 2011  476(7360)  332-5
14-3-3 proteins act as intracellular receptors for rice Hd3a florigen.
Wang K., Tang D., Hong L., Xu W., Huang J., Li M., Gu M., Xue Y., Cheng Z.
PLoS Genet. 2010  6(1)  e1000818
DEP and AFO regulate reproductive habit in rice.
Komiya R., Yokoi S., Shimamoto K.
Development 2009  136(20)  3443-50
A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.
Komiya R,Ikegami A,Tamaki S,Yokoi S,Shimamoto K
Development 2008  135  767-74
Hd3a and RFT1 are essential for flowering in rice.
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003  44(12)  1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
Kyozuka,J., Kobayashi,T., Morita,M. and Shimamoto,K.
Plant Cell Physiol. 2000  41(6)  710-718
Spatially and temporally regulated expression of rice MADS bos genes with similarity to Arabidopsis class A, B, C genes
Lim J, Moon YH, An G, Jang SK.
Plant Mol. Biol. 2000  44(4)  513-527
Two rice MADS domain proteins interact with OsMADS1.
Moon,Y.H., Kang,H.G., Jung,J.Y., Jeon,J.S., Sung,S.K. and An,G.
Plant Physiol. 1999  120(4)  1193-1204
Determination of the motif responsible for interaction between the rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system.
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DB Reference
Gramene ID -
Gene Ontology transcription( GO:0006350 )
vegetative to reproductive phase transition( GO:0010228 )
reproductive developmental process( GO:0003006 )
transcription factor activity( GO:0003700 )
protein binding( GO:0005515 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
Trait Ontology -
Plant Ontology plant egg cell( PO:0020094 )
Related Strains
Phenotype images
Last updated
Nov 27, 2023