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Basic Information
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CGSNL Gene Symbol
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MADS13
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Gene Symbol Synonym
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OsMADS13, MAF1, RMADS206
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CGSNL Gene Name
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MADS BOX GENE 13
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Gene Name Synonym
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MADS box gene13, MADS-box transcription factor 13
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Protein Name
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MADS-BOX TRANSCRIPTION FACTOR 13
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Allele
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osmads13-1, osmads13-2, osmads13-3, mads13-3
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Chromosome No.
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12
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Explanation
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AF151693. Q2QW53. OsMADS13 is the rice ortholog of STK, FBP7, and FBP11. GRO:0007172; embryo stage EM6 ; GRO:0007173; embryo stage EM4 ; GRO:0007175; embryo stage EM8 ; GRO:0007169; embryo stage EM5. ortholog of Arabidopsis STK (SEEDSTICK).
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Trait Class
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Reproductive organ - panicle
Other
Reproductive organ - Spikelet, flower, glume, awn
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Expression
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spikelet - Sp8 - Formation of ovule and pollens
ovule - Ov1 - Ovule primordium differentiation
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Sequence/Locus
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cDNA Accession No.
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AK070425
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MSU ID
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LOC_Os12g10540.1
LOC_Os12g10540.2
LOC_Os12g10540.3
LOC_Os12g10540.4
LOC_Os12g10540.5
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RAP ID
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Os12g0207000
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Mao X., Zheng X., Chen W., Li C.
Int J Mol Sci 2023 24(16)
Characterization and Gene Mapping of an Open-Glume <i>Oryza sativa</i> L. Mutant.
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Kannan P., Chongloi G.L., Majhi B.B., Basu D., Veluthambi K., Vijayraghavan U.
Planta 2021 253(2) 39
Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting.
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Osnato M., Matias-Hernandez L., Aguilar-Jaramillo AE., Kater M.M., Pelaz S.
Plant Physiol. 2020 183(4) 1663-1680
Genes of the <i>RAV</i> Family Control Heading Date and Carpel Development in Rice.
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Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018 675 285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
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Marathi B., Jena K.K.
Euphytica 2014 201 1-14
Floral traits to enhance outcrossing for higher hybrid seed production in rice: present status and future prospects
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Yan D., Zhou Y., Ye S., Zeng L., Zhang X., He Z.
Sci China Life Sci 2013 56(3) 275-83
Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice.
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Dreni L., Pilatone A., Yun D., Erreni S., Pajoro A., Caporali E., Zhang D., Kater M.M.
Plant Cell 2011 23(8) 2850-63
Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy.
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Li H. , Liang W. , Yin C. , Zhu L. , Zhang D.
Plant Physiol. 2011 156(1) 263-74
Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.
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Li H., Liang W., Hu Y., Zhu L., Yin C., Xu J., Dreni L., Kater M.M., Zhang D.
Plant Cell 2011 23(7) 2536-52
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
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Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007 8 242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
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Dreni L., Jacchia S., Fornara F., Fornari M., Ouwerkerk P.B., An G., Colombo L., Kater M.M.
Plant J. 2007 52(4) 690-9
The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
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Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003 44(12) 1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
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Favaro, R., Immink, R.G.H., Feriole, V., Bernasconi, B., Byzova, M. et al.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2002 268 152-159
Ovule-specific MADS-box proteins have conserved protein-protein interactions in monocot and dicot plants.
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Lopez-Dee,Z.P., Wittich,P., M., Rigola,D., I., Gorla,M.S., Kater,M.M. and Colombo,L.
Dev Genet. 1999 25(3) 237-244
OsMADS13, a novel rice MADS-box gene expressed during ovule development.
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TextPresso Search
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Search textpresso for MADS13
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0080041
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Ontologies
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Gene Ontology
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floral meristem determinacy( GO:0010582 )
specification of ovule identity( GO:0010622 )
transcription factor activity( GO:0003700 )
protein binding( GO:0005515 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
indeterminate inflorescence morphogenesis( GO:0048283 )
ovule development( GO:0048481 )
inflorescence development( GO:0010229 )
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Trait Ontology
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pistil anatomy and morphology trait( TO:0000223 )
female sterility( TO:0000358 )
inflorescence development trait( TO:0000621 )
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Plant Ontology
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inflorescence development stage( PO:0001083 )
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Related Strains
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Phenotype images
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Last updated
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Nov 27, 2023
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