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Detail of Gene

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Basic Information
CGSNL Gene Symbol MADS13
Gene Symbol Synonym OsMADS13, MAF1, RMADS206
Gene Name Synonym MADS box gene13, MADS-box transcription factor 13
Allele osmads13-1, osmads13-2, osmads13-3, mads13-3
Chromosome No. 12
Explanation AF151693. Q2QW53. OsMADS13 is the rice ortholog of STK, FBP7, and FBP11. GRO:0007172; embryo stage EM6 ; GRO:0007173; embryo stage EM4 ; GRO:0007175; embryo stage EM8 ; GRO:0007169; embryo stage EM5. ortholog of Arabidopsis STK (SEEDSTICK).
Trait Class Reproductive organ - panicle
Reproductive organ - Spikelet, flower, glume, awn
Expression spikelet - Sp8 - Formation of ovule and pollens
ovule - Ov1 - Ovule primordium differentiation
cDNA Accession No. AK070425
MSU ID LOC_Os12g10540.1
RAP ID Os12g0207000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Mao X., Zheng X., Chen W., Li C.
Int J Mol Sci 2023  24(16) 
Characterization and Gene Mapping of an Open-Glume <i>Oryza sativa</i> L. Mutant.
Kannan P., Chongloi G.L., Majhi B.B., Basu D., Veluthambi K., Vijayraghavan U.
Planta 2021  253(2)  39
Characterization of a new rice OsMADS1 null mutant generated by homologous recombination-mediated gene targeting.
Osnato M., Matias-Hernandez L., Aguilar-Jaramillo AE., Kater M.M., Pelaz S.
Plant Physiol. 2020  183(4)  1663-1680
Genes of the <i>RAV</i> Family Control Heading Date and Carpel Development in Rice.
Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018  675  285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
Marathi B., Jena K.K.
Euphytica 2014  201  1-14
Floral traits to enhance outcrossing for higher hybrid seed production in rice: present status and future prospects
Yan D., Zhou Y., Ye S., Zeng L., Zhang X., He Z.
Sci China Life Sci 2013  56(3)  275-83
Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice.
Dreni L., Pilatone A., Yun D., Erreni S., Pajoro A., Caporali E., Zhang D., Kater M.M.
Plant Cell 2011  23(8)  2850-63
Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy.
Li H. , Liang W. , Yin C. , Zhu L. , Zhang D.
Plant Physiol. 2011  156(1)  263-74
Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.
Li H., Liang W., Hu Y., Zhu L., Yin C., Xu J., Dreni L., Kater M.M., Zhang D.
Plant Cell 2011  23(7)  2536-52
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
Dreni L., Jacchia S., Fornara F., Fornari M., Ouwerkerk P.B., An G., Colombo L., Kater M.M.
Plant J. 2007  52(4)  690-9
The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003  44(12)  1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
Favaro, R., Immink, R.G.H., Feriole, V., Bernasconi, B., Byzova, M. et al.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2002  268  152-159
Ovule-specific MADS-box proteins have conserved protein-protein interactions in monocot and dicot plants.
Lopez-Dee,Z.P., Wittich,P., M., Rigola,D., I., Gorla,M.S., Kater,M.M. and Colombo,L.
Dev Genet. 1999  25(3)  237-244
OsMADS13, a novel rice MADS-box gene expressed during ovule development.
TextPresso Search Search textpresso for MADS13 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0080041
Gene Ontology floral meristem determinacy( GO:0010582 )
specification of ovule identity( GO:0010622 )
transcription factor activity( GO:0003700 )
protein binding( GO:0005515 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
indeterminate inflorescence morphogenesis( GO:0048283 )
ovule development( GO:0048481 )
inflorescence development( GO:0010229 )
Trait Ontology pistil anatomy and morphology trait( TO:0000223 )
female sterility( TO:0000358 )
inflorescence development trait( TO:0000621 )
Plant Ontology inflorescence development stage( PO:0001083 )
Related Strains
Phenotype images
Last updated
Nov 27, 2023