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Basic Information
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CGSNL Gene Symbol
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MADS5
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Gene Symbol Synonym
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OsMADS5, FDRMADS2
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CGSNL Gene Name
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MADS BOX GENE 5
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Gene Name Synonym
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MADS box gene5, MADS-box transcription factor 5
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Protein Name
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MADS-BOX TRANSCRIPTION FACTOR 5
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Allele
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osmads5
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Chromosome No.
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6
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Explanation
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A2Y9P0(indica), Q0DEB8(japonica). a SEP-like gene. GO:2000280: regulation of root development. GO:1901698: response to nitrogen compound.
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Trait Class
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Vegetative organ - Root
Reproductive organ - Heading date
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Other
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK064184
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MSU ID
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LOC_Os06g06750.1
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RAP ID
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Os06g0162800
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Tang H., Fan J., Wang R., Zhu J., Xiang X., Dong J., Zhou L., Wang L.
G3 (Bethesda) 2023 13(7)
Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice.
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Guo X., Chen Y., Hu Y., Feng F., Zhu X., Sun H., Li J., Zhao Q., Sun H.
Plant J. 2023
OsMADS5 interacts with OsSPL14/17 to inhibit rice root elongation by restricting cell proliferation of root meristem under ammonium supply.
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Phule A.S., Barbadikar K.M., Maganti S.M., Seguttuvel P., Subrahmanyam D., Babu MBBP., Kumar P.A.
Sci Rep 2019 9(1) 5235
RNA-seq reveals the involvement of key genes for aerobic adaptation in rice.
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Song S., Wang G., Hu Y., Liu H., Bai X., Qin R., Xing Y.
J. Exp. Bot. 2018 69(18) 4283-4293
OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.
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Nayar S., Kapoor M., Kapoor S.
J. Exp. Bot. 2014 65(18) 5339-50
Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
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Christensen A.R., Malcomber S.T.
Evodevo 2012 3 4
Duplication and diversification of the LEAFY HULL STERILE1 and Oryza sativa MADS5 SEPALLATA lineages in graminoid Poales.
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Cui R,Han J,Zhao S,Su K,Wu F,Du X,Xu Q,Chong K,Theissen G,Meng Z
Plant J. 2010 61(5) 767-81
Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
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Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007 8 242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
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Agrawal GK, Abe K, Yamazaki M, Miyao A, Hirochika H.
Plant Mol. Biol. 2005 59(1) 125-135
Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene.
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Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003 44(12) 1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
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Kang,H.G. and An,G.
Mol. Cells 1997 7(1) 45-51
Isolation and characterization of a rice MADS box gene belonging to the AGL2 gene family.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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regulation of root meristem growth( GO:0010082 )
response to ammonium ion( GO:0060359 )
negative regulation of cell proliferation( GO:0008285 )
root development( GO:0048364 )
transcription( GO:0006350 )
cell differentiation( GO:0030154 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
flower development( GO:0009908 )
sequence-specific DNA binding( GO:0043565 )
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Trait Ontology
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pollen free( TO:0000245 )
flowering time( TO:0002616 )
inflorescence anatomy and morphology trait( TO:0000373 )
root development trait( TO:0000656 )
seminal root length( TO:0000586 )
nitrogen sensitivity( TO:0000011 )
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Plant Ontology
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lemma development stage( PO:0001047 )
lodicule development stage( PO:0001049 )
palea development stage( PO:0001048 )
root development stage( PO:0007520 )
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Related Strains
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-
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Phenotype images
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-
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Last updated
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Feb 22, 2025
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Update info.