Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol MADS5
Gene Symbol Synonym OsMADS5, FDRMADS2
CGSNL Gene Name MADS BOX GENE 5
Gene Name Synonym MADS box gene5, MADS-box transcription factor 5
Protein Name MADS-BOX TRANSCRIPTION FACTOR 5
Allele
Chromosome No. 6
Explanation A2Y9P0(indica), Q0DEB8(japonica). a SEP-like gene.
Trait Class Reproductive organ - Heading date
Reproductive organ - Pollination, fertilization, fertility - Male sterility
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Other
Expression
Sequence/Locus
cDNA Accession No. AK064184
MSU ID LOC_Os06g06750.1
RAP ID Os06g0162800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Phule A.S., Barbadikar K.M., Maganti S.M., Seguttuvel P., Subrahmanyam D., Babu MBBP., Kumar P.A.
Sci Rep 2019  9(1)  5235
RNA-seq reveals the involvement of key genes for aerobic adaptation in rice.
Song S., Wang G., Hu Y., Liu H., Bai X., Qin R., Xing Y.
J. Exp. Bot. 2018  69(18)  4283-4293
OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.
Nayar S., Kapoor M., Kapoor S.
J. Exp. Bot. 2014  65(18)  5339-50
Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
Christensen A.R., Malcomber S.T.
Evodevo 2012  3  4
Duplication and diversification of the LEAFY HULL STERILE1 and Oryza sativa MADS5 SEPALLATA lineages in graminoid Poales.
Cui R,Han J,Zhao S,Su K,Wu F,Du X,Xu Q,Chong K,Theissen G,Meng Z
Plant J. 2010  61(5)  767-81
Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
Agrawal GK, Abe K, Yamazaki M, Miyao A, Hirochika H.
Plant Mol. Biol. 2005  59(1)  125-135
Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene.
Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003  44(12)  1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
Kang,H.G. and An,G.
Mol. Cells 1997  7(1)  45-51
Isolation and characterization of a rice MADS box gene belonging to the AGL2 gene family.
TextPresso Search Search textpresso for MADS5 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology transcription( GO:0006350 )
cell differentiation( GO:0030154 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
flower development( GO:0009908 )
sequence-specific DNA binding( GO:0043565 )
Trait Ontology pollen free( TO:0000245 )
flowering time( TO:0002616 )
inflorescence anatomy and morphology trait( TO:0000373 )
Plant Ontology lemma development stage( PO:0001047 )
lodicule development stage( PO:0001049 )
palea development stage( PO:0001048 )
Related Strains
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Phenotype images
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Last updated
Jan 6, 2020


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