Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol MADS4
Gene Symbol Synonym OsMADS4, PI1, DLN140, OsDLN140
Gene Name Synonym MADS box gene4, MADS-box transcription factor 4, GLOBOSA(GLO)-like MADS-box gene-4, DLN repressor 140, DLN motif protein 140
Chromosome No. 5
Explanation Q40703. PO:0009046; flower. a rice PI orthologue. JF312006, JF312008.
Trait Class Reproductive organ - Spikelet, flower, glume, awn
Tolerance and resistance - Stress tolerance
Reproductive organ - panicle
cDNA Accession No. AK100233
MSU ID LOC_Os05g34940.1
RAP ID Os05g0423400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Wu T., Ali A., Wang J., Song J., Fang Y., Zhou T., Luo Y., Zhang H., Chen X., Liao Y., Liu Y., Xu P., Wu X.
BMC Plant Biol. 2021  21(1)  390
A homologous gene of OsREL2/ASP1, ASP-LSL regulates pleiotropic phenotype including long sterile lemma in rice.
Duan Y., Chen Y., Li W., Pan M., Qu X., Shi X., Cai Z., Liu H., Zhao F., Kong L., Ye Y., Wang F., Xue Y., Wu W.
Plant Physiol. 2019  181(4)  1600-1614
<i>RETINOBLASTOMA-RELATED</i> Genes Specifically Control Inner Floral Organ Morphogenesis and pollen Development in Rice.
Kong L., Duan Y., Ye Y., Cai Z., Wang F., Qu X., Qiu R., Wu C., Wu W.
PLoS ONE 2019  14(8)  e0221473
Screening and analysis of proteins interacting with OsMADS16 in rice (Oryza sativa L.).
Phule A.S., Barbadikar K.M., Maganti S.M., Seguttuvel P., Subrahmanyam D., Babu MBBP., Kumar P.A.
Sci Rep 2019  9(1)  5235
RNA-seq reveals the involvement of key genes for aerobic adaptation in rice.
Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019  20(7) 
Analysis of Rice Proteins with DLN repressor Motif/S.
Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018  675  285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
Yu H., Ruan B., Wang Z., Ren D., Zhang Y., Leng Y., Zeng D., Hu J., Zhang G., Zhu L., Gao Z., Chen G., Guo L., Chen W., Qian Q.
Front Plant Sci 2017  8  486
Fine Mapping of a Novel defective glume 1 (dg1) Mutant, Which Affects Vegetative and Spikelet Development in Rice.
Ren D., Rao Y., Wu L., Xu Q., Li Z., Yu H., Zhang Y., Leng Y., Hu J., Zhu L., Gao Z., Dong G., Zhang G., Guo L., Zeng D., Qian Q.
J Integr Plant Biol 2015   
The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.
Marathi B., Jena K.K.
Euphytica 2014  201  1-14
Floral traits to enhance outcrossing for higher hybrid seed production in rice: present status and future prospects
Duan Y., Li S., Chen Z., Zheng L., Diao Z., Zhou Y., Lan T., Guan H., Pan R., Xue Y., Wu W.
Plant J. 2012  72(5)  829-42
Dwarf and Deformed Flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.).
Wei,R.X. and Ge,S.
J Integr Plant Biol 2011  53(8)  682-693
Evolutionary history and complementary selective relaxation of the duplicated PI genes in grasses
Shan-Guo Yao, Ohmori S., Kimizu M., Yoshida H.
Plant Cell Physiol. 2008  49(5)  853-7
Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.
BMC Genomics 2007  8  242
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.
Shri Ram Yadav, Prasad K., Vijayraghavan U.
Genetics 2007  176(1)  283-94
Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ.
Prasad K., Parameswaran S., Vijayraghavan U.
The Plant journal : for cell and molecular biology 2005  43(6)  915-28
OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs.
Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
Plant Cell Physiol. 2003  44(12)  1403-1411
Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.
Xiao H, Wang Y, Liu D, Wang W, Li X, Zhao X, Xu J, Zhai W, Zhu L.
Plant Mol. Biol. 2003  52(5)  957-966
Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference.
Prasad K., Vijayraghavan U.
Genetics 2003  165(4)  2301-5
Double-stranded RNA interference of a rice PI/GLO paralog, OsMADS2, uncovers its second-whorl-specific function in floral organ patterning.
Moon,Y.H., Jung,J.Y., Kang,H.G. and An,G.
Plant Mol. Biol. 1999  40(1)  167-177
Identification of a rice APETALA3 homologue by yeast two-hybrid screening.
Kang, H.-G., Jeon, J.-S., Lee, S. and An, G.
Plant Mol. Biol. 1998  38  1021-1029
Identification of class B and class C floral organ identity genes from rice plants.
Chung,Y.-Y., Kim,S.-R., Kang,H.-G., Noh,Y.-S., Park,M.C. and An,G.
Plant Sci. 1995  109  45-56
Characterization of two rice MADS box genes homologous to GLOBOSA
TextPresso Search Search textpresso for MADS4 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0061387
Gene Ontology sequence-specific DNA binding( GO:0043565 )
cell differentiation( GO:0030154 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
flower development( GO:0009908 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
inflorescence development( GO:0010229 )
Trait Ontology flower anatomy and morphology trait( TO:0000499 )
flower development trait( TO:0000622 )
inflorescence development trait( TO:0000621 )
Plant Ontology flower( PO:0009046 )
flower development stage( PO:0007615 )
inflorescence development stage( PO:0001083 )
Related Strains
Phenotype images
Last updated
Mar 10, 2022