Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol HOX1
Gene Symbol Synonym Oshox1, OsHox1, OsHDZ38, OsHDZIP38, HDZ38, HDZIP38
Gene Name Synonym rice homeobox gene 1, Homeobox-leucine zipper protein HOX1, Homeodomain transcription factor HOX1, HD-ZIP protein HOX1, homeodomain-leucine zipper transcription factor 38, OsHDZIP transcription factor 38
Chromosome No. 10
Explanation EF555521, X96681. Q40691(indica), Q7XC54(japonica).
Trait Class Vegetative organ - Leaf
Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK065404
MSU ID LOC_Os10g41230.1
RAP ID Os10g0561800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022  9(8) 
The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
Dai D., Zhang H., He L., Chen J., Du C., Liang M., Zhang M., Wang H., Ma L.
Int J Mol Sci 2022  23(16) 
<i>Panicle Apical Abortion 7</i> Regulates Panicle Development in Rice (<i>Oryza sativa</i> L.).
Zhang T., You J., Zhang Y., Yao W., Chen W., Duan Q., Xiao W., Ye L., Zhou Y., Sang X., Ling Y., He G., Li Y.
New Phytol. 2021   
lf1 regulates the lateral organs polarity development in rice.
Hu Y., Li S., Fan X., Song S., Zhou X., Weng X., Xiao J., Li X., Xiong L., You A., Xing Y.
Plant Physiol. 2020  184(3)  1424-1437
<i>OsHOX1</i> and <i>OsHOX28</i> Redundantly Shape Rice tiller angle by Reducing <i>HSFA2D</i> Expression and Auxin Content.
He Q., Yang L., Hu W., Zhang J., Xing Y.
Sci Rep 2018  8(1)  14051
Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.
Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
Plant Mol. Biol. 2008  66(1-2)  87-103
A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
Scarpella E, Boot KJ, Rueb S, Meijer AH.
Plant Physiol. 2002  130(3)  1349-1360
The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition.
Scarpella, E., S. Rueb, K.J.M.Boot, J.H.C. Hoge and A.H. Meijer
Development 2000  127  3655-3669
A role for the rice homeobox gene Oshox1 in provascular cell fate commitment.
Meijer,A.H., R.J., d'Erfurth,I., Shen,W. and Hoge,J.H.
Mol. Gen. Genet. 2000  263(1)  12-21
HD-Zip proteins of families I and II from rice: interactions and functional properties.
Meijer,A.H., Scarpella,E., E.L., Qin,L., Taal,A.J., Rueb,S., Harrington,S.E., McCouch,S.R., Schilperoort,R.A. and Hoge,J.H.
Plant J. 1997  11(2)  263-276
Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice.
TextPresso Search Search textpresso for HOX1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology response to salt stress( GO:0009651 )
leaf development( GO:0048366 )
auxin homeostasis( GO:0010252 )
regulation of auxin biosynthetic process( GO:0010600 )
negative regulation of transcription, DNA-dependent( GO:0045892 )
negative gravitropism( GO:0009959 )
DNA binding( GO:0003677 )
sequence-specific DNA binding( GO:0043565 )
transcription activator activity( GO:0016563 )
regulation of transcription, DNA-dependent( GO:0006355 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
transcription factor activity( GO:0003700 )
Trait Ontology tiller angle( TO:0000567 )
auxin content( TO:0002672 )
gravity response trait( TO:0002693 )
leaf development trait( TO:0000655 )
salt tolerance( TO:0006001 )
Plant Ontology leaf development stage( PO:0001050 )
shoot apical meristem( PO:0020148 )
primordium( PO:0025127 )
procambium( PO:0025275 )
vascular bundle( PO:0005020 )
Related Strains
Phenotype images
Last updated
Jan 18, 2023