Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol RAFTIN1
Gene Symbol Synonym OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1
CGSNL Gene Name RAFTIN1
Gene Name Synonym rice raftin1, raftin1, BURP domain-containing protein 13, Protein RAFTIN 1, RAFTIN1protein
Protein Name BURP DOMAIN-CONTAINING PROTEIN 13
Allele
Chromosome No. 8
Explanation This gene regulates the development of pollen. LOC_Os08g38810. RAC/ROP-TYPE GTPASE. Q7F8U7. KC610928-KC610940 (O. sativa and wild rice species, partial cds).
Trait Class Reproductive organ - Pollination, fertilization, fertility - Fertility restoration
Expression
Sequence/Locus
cDNA Accession No. AK120942
MSU ID LOC_Os08g38810.1
LOC_Os08g38810.2
RAP ID Os08g0496800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Ni E., Zhou L., Li J., Jiang D., Wang Z., Zheng S., Qi H., Zhou Y., Wang C., Xiao S., Liu Z., Zhou H., Zhuang C.
Front Plant Sci 2018  9  1217
<i>OsCER1</i> Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (<i>Oryza sativa</i> L.).
Zhu,T., Xu,P.Z., Liu,J.P., Peng,S., Mo,X.C. and Gao,L.Z.
Mol. Phylogenet. Evol. 2014  70  348-361
Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions
Tan H., Liang W., Hu J., Zhang D.
Dev. Cell 2012  22(6)  1127-37
MTR1 Encodes a Secretory fasciclin glycoprotein Required for Male Reproductive Development in Rice.
Shi J. , Tan H. , Yu X.H. , Liu Y. , Liang W. , Ranathunge K. , Franke R.B. , Schreiber L. , Wang Y. , Kai G. , Shanklin J. , Ma H. , Zhang D.
Plant Cell 2011  23(6)  2225-46
Defective Pollen Wall Is Required for Anther and Microspore Development in Rice and Encodes a Fatty Acyl Carrier Protein Reductase.
Ding X,Hou X,Xie K,Xiong L
Planta. 2009  230  149-63
Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses.
Da-Sheng Zhang, Wan-Qi Liang, Yuan Z., Li N., Shi J., Wang J., Yu-Min Liu, Wen-Juan Yu, Da-Bing Zhang
Mol Plant 2008  1(4)  599-610
Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development.
Wang,A., Xia,Q., Xie,W., Datla,R. and Selvaraj,G.
Proc. Natl. Acad. Sci. U.S.A. 2003  100(24)  14487-14492
The classical Ubisch bodies carry a sporophytically produced structural protein (RAFTIN) that is essential for pollen development.
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DB Reference
Gramene ID -
Ontologies
Gene Ontology pollen development( GO:0009555 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
exine( GO:0043668 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Apr 23, 2019


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