Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol RFL
Gene Symbol Synonym RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2
CGSNL Gene Name FLO-LFY HOMOLOG OF RICE
Gene Name Synonym Rice LFY-like gene, Probable transcription factor FL, RICE FLORICAULA, ABERRANT PANICLE ORGANIZATION 2, RFL/ABERRANT PANICLE ORGANIZATION 2, SHORT and SOLID CULM
Protein Name FLO-LFY HOMOLOG OF RICE
Allele apo2, ssc
Chromosome No. 4
Explanation A homolog of FLORICAULA (FLO) of Antirrhinum and LEAFY (FLY) of Arabidopsis. the rice homologue of Ara- bidopsis LFY. RFL is not involved in floral initiation as FLO/FLY, but in panicle branching. A2XX39(indica), Q0JAI1(japonica). TO:0000784: inflorescence branch anatomy and morphology trait. GO:0090506: axillary shoot meristem initiation. KC626097-KC626107 (O. sativa and wild rice species, 3' UTR). AF065992, AF397034. LOC_Os04g51000. GO:0010336: gibberellic acid homeostasis. GO:2000144: positive regulation of DNA-dependent transcription, initiation. TO:0020083: stem diameter.
Trait Class Character as QTL - Yield and productivity
Reproductive organ - Panicle, Mode of branching
Vegetative organ - Shoot apical meristem(SAM)
Reproductive organ - Heading date
Vegetative organ - Culm
Expression
Sequence/Locus
cDNA Accession No. AB005620
MSU ID LOC_Os04g51000.1
RAP ID Os04g0598300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Huang Y., Bai X., Luo M., Xing Y.
J Integr Plant Biol 2018   
short panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.
Wang J., Wang R., Wang Y., Zhang L., Zhang L., Xu Y., Yao S.
Plant J. 2017   
SHORT and Solid Culm/RFL/APO2 for culm development in rice.
Bai X., Huang Y., Mao D., Wen M., Zhang L., Xing Y.
Sci Rep 2016  6  19022
Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
Wang L., Sun S., Jin J., Fu D., Yang X., Weng X., Xu C., Li X., Xiao J., Zhang Q.
Proc. Natl. Acad. Sci. U.S.A. 2015  112(50)  15504-9
Coordinated regulation of vegetative and reproductive branching in rice.
Deshpande G.M., Ramakrishna K., Chongloi G.L., Vijayraghavan U.
J. Exp. Bot. 2015  66(9)  2773-84
Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
Liang W., Shang F., Lin Q., Lou C., Zhang J.
Gene 2014  537(1)  1-5
Tillering and panicle branching genes in rice.
Zhu,T., Xu,P.Z., Liu,J.P., Peng,S., Mo,X.C. and Gao,L.Z.
Mol. Phylogenet. Evol. 2014  70  348-361
Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions
Jiang G., Xiang Y., Zhao J., Yin D., Zhao X., Zhu L., Zhai W.
Genetics 2014  197(4)  1395-1407
Regulation of Inflorescence Branch Development in Rice Through a Novel Pathway Involving the Pentatricopeptide Repeat Protein sped1-D.
Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.
Curr. Opin. Plant Biol. 2013  16(2)  213-20
Genes offering the potential for designing yield-related traits in rice.
Ikeda-Kawakatsu K., Maekawa M., Izawa T., Itoh J.I., Nagato Y.
Plant J. 2012  69(1)  168-80
ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1.
Rao NN,Prasad K,Kumar PR,Vijayraghavan U
Proc. Natl. Acad. Sci. U.S.A. 2008  105  3646-51
Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture.
Prasad,K., Kushalappa,K. and Vijayraghavan,U.
Mech. Dev. 2003  120(4)  491-502
Mechanism underlying regulated expression of RFL, a conserved transcription factor, in the developing rice inflorescence.
Kyozuka,J., Konishi,S., Nemoto,K., Izawa,T. and Shimamoto,K.
Proc. Natl. Acad. Sci. U.S.A. 1998  95(5)  1979-1982
Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation.
TextPresso Search Search textpresso for RFL ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
multicellular organismal development( GO:0007275 )
secondary shoot formation( GO:0010223 )
regulation of transcription( GO:0045449 )
photoperiodism, flowering( GO:0048573 )
inflorescence development( GO:0010229 )
positive regulation of gibberellin biosynthetic process( GO:0010372 )
gibberellin catabolic process( GO:0045487 )
regulation of programmed cell death( GO:0043067 )
DNA fragmentation involved in apoptosis( GO:0006309 )
positive regulation of transcription, DNA-dependent( GO:0045893 )
meristem maintenance( GO:0010073 )
regulation of cell division( GO:0051302 )
regulation of unidimensional cell growth( GO:0051510 )
Trait Ontology grain number( TO:0002759 )
primary branch number( TO:0000547 )
flowering time( TO:0002616 )
tillering ability( TO:0000329 )
inflorescence development trait( TO:0000621 )
inflorescence branching( TO:0000050 )
stem length( TO:0000576 )
plant height( TO:0000207 )
gibberellic acid content( TO:0002675 )
internode length( TO:0000145 )
stem width( TO:0001035 )
Plant Ontology inflorescence development stage( PO:0001083 )
vascular system( PO:0000034 )
stem elongation stage( PO:0007089 )
shoot meristem( PO:0006079 )
vascular leaf primordium( PO:0000017 )
Related Strains
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Phenotype images
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Last updated
May 11, 2019


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