|
Basic Information
|
|
CGSNL Gene Symbol
|
RPA1
|
|
Gene Symbol Synonym
|
OsRPA1, OsRPA70b, RPA70b
|
|
CGSNL Gene Name
|
REPLICATION PROTEIN A 1
|
|
Gene Name Synonym
|
replication protein A1, Replication protein A 70kDa subunit b, RPA70kDa subunit b
|
|
Protein Name
|
REPLICATION PROTEIN A 1
|
|
Allele
|
|
|
Chromosome No.
|
3
|
|
Explanation
|
This gene encodes an ortholog of replication protein A1 (RPA1) in relation to deepwater response. This gene is expressed in the intercalary meristem of internode and its transcript level increases as a result of GA treatment and submergence.
AF009179, AB111916. Q10Q08. up-regulated after fertilization (Abiko et al. 2013).
|
|
Trait Class
|
Biochemical character
Tolerance and resistance - Stress tolerance
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
AK060582
|
|
MSU ID
|
LOC_Os03g11540.1
|
|
RAP ID
|
Os03g0214100
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
Link to INSD Accession List
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Kim J.H., Hwangbo K., Lee E., Dubey S.K., Chung M.S., Chung B.Y., Lee S.
Plants (Basel) 2021 10(5)
Application of Gamma Ray-Responsive Genes for Transcriptome-Based Phytodosimetry in Rice.
|
|
Aya K., Hobo T., Sato-Izawa K., Ueguchi-Tanaka M., Kitano H., Matsuoka M.
Plant Cell Physiol. 2014 55(5) 897-912
A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway.
|
|
Hayashi G., Shibato J., Imanaka T., Cho K., Kubo A., Kikuchi S., Satoh K., Kimura S., Ozawa S., Fukutani S., Endo S., Ichikawa K., Agrawal G.K., Shioda S., Fukumoto M., Rakwal R.
J. Hered. 2014 105(5) 723-38
Unraveling low-level gamma radiation--responsive changes in expression of early and late genes in leaves of rice seedlings at litate Village, Fukushima.
|
|
Abiko M., Maeda H., Tamura K., Hara-Nishimura I., Okamoto T.
J. Exp. Bot. 2013 64(7) 1927-40
Gene expression profiles in rice gametes and zygotes: identification of gamete-enriched genes and up- or down-regulated genes in zygotes after fertilization.
|
|
Ishibashi T,Kimura S,Sakaguchi K
J. Biochem. 2006 139 99-104
A higher plant has three different types of RPA heterotrimeric complex.
|
|
Ishibashi,T., Koga,A., Yamamoto,T., Uchiyama,Y., Mori,Y., Hashimoto,J., Kimura,S. and Sakaguchi,K.
FEBS J. 2005 272(13) 3270-3281
Two types of replication protein A in seed plants.
|
|
Ishibashi,T., Kimura,S., Furukawa,T., Hatanaka,M., Hashimoto,J. and Sakaguchi,K.
Gene 2001 272(1-2) 335-343
Two types of replication protein A 70 kDa subunit in rice, Oryza sativa: molecular cloning, characterization, and cellular & tissue distribution.
|
|
E., Jagoueix,S. and Kende,H.
Proc. Natl. Acad. Sci. U.S.A. 1997 94(18) 9979-9983
Expression of an ortholog of replication protein A1 (RPA1) is induced by gibberellin in deepwater rice.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
response to gamma radiation( GO:0010332 )
DNA repair( GO:0006281 )
response to gibberellin stimulus( GO:0009739 )
response to deep water( GO:0030912 )
DNA recombination( GO:0006310 )
response to UV-B( GO:0010224 )
metal ion binding( GO:0046872 )
DNA binding( GO:0003677 )
DNA replication factor A complex( GO:0005662 )
DNA replication( GO:0006260 )
embryonic development( GO:0009790 )
|
|
Trait Ontology
|
radiation response trait( TO:0000161 )
|
|
Plant Ontology
|
-
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Sep 14, 2021
|
Update info.