Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol RPA1
Gene Symbol Synonym OsRPA1, OsRPA70b, RPA70b
CGSNL Gene Name REPLICATION PROTEIN A 1
Gene Name Synonym replication protein A1, Replication protein A 70kDa subunit b, RPA70kDa subunit b
Protein Name REPLICATION PROTEIN A 1
Allele
Chromosome No. 3
Explanation This gene encodes an ortholog of replication protein A1 (RPA1) in relation to deepwater response. This gene is expressed in the intercalary meristem of internode and its transcript level increases as a result of GA treatment and submergence. AF009179, AB111916. Q10Q08. up-regulated after fertilization (Abiko et al. 2013).
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK060582
MSU ID LOC_Os03g11540.1
RAP ID Os03g0214100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Kim J.H., Hwangbo K., Lee E., Dubey S.K., Chung M.S., Chung B.Y., Lee S.
Plants (Basel) 2021  10(5) 
Application of Gamma Ray-Responsive Genes for Transcriptome-Based Phytodosimetry in Rice.
Aya K., Hobo T., Sato-Izawa K., Ueguchi-Tanaka M., Kitano H., Matsuoka M.
Plant Cell Physiol. 2014  55(5)  897-912
A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway.
Hayashi G., Shibato J., Imanaka T., Cho K., Kubo A., Kikuchi S., Satoh K., Kimura S., Ozawa S., Fukutani S., Endo S., Ichikawa K., Agrawal G.K., Shioda S., Fukumoto M., Rakwal R.
J. Hered. 2014  105(5)  723-38
Unraveling low-level gamma radiation--responsive changes in expression of early and late genes in leaves of rice seedlings at litate Village, Fukushima.
Abiko M., Maeda H., Tamura K., Hara-Nishimura I., Okamoto T.
J. Exp. Bot. 2013  64(7)  1927-40
Gene expression profiles in rice gametes and zygotes: identification of gamete-enriched genes and up- or down-regulated genes in zygotes after fertilization.
Ishibashi T,Kimura S,Sakaguchi K
J. Biochem. 2006  139  99-104
A higher plant has three different types of RPA heterotrimeric complex.
Ishibashi,T., Koga,A., Yamamoto,T., Uchiyama,Y., Mori,Y., Hashimoto,J., Kimura,S. and Sakaguchi,K.
FEBS J. 2005  272(13)  3270-3281
Two types of replication protein A in seed plants.
Ishibashi,T., Kimura,S., Furukawa,T., Hatanaka,M., Hashimoto,J. and Sakaguchi,K.
Gene 2001  272(1-2)  335-343
Two types of replication protein A 70 kDa subunit in rice, Oryza sativa: molecular cloning, characterization, and cellular & tissue distribution.
E., Jagoueix,S. and Kende,H.
Proc. Natl. Acad. Sci. U.S.A. 1997  94(18)  9979-9983
Expression of an ortholog of replication protein A1 (RPA1) is induced by gibberellin in deepwater rice.
TextPresso Search Search textpresso for RPA1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to gamma radiation( GO:0010332 )
DNA repair( GO:0006281 )
response to gibberellin stimulus( GO:0009739 )
response to deep water( GO:0030912 )
DNA recombination( GO:0006310 )
response to UV-B( GO:0010224 )
metal ion binding( GO:0046872 )
DNA binding( GO:0003677 )
DNA replication factor A complex( GO:0005662 )
DNA replication( GO:0006260 )
embryonic development( GO:0009790 )
Trait Ontology radiation response trait( TO:0000161 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Sep 14, 2021


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