Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol OSH6
Gene Symbol Synonym OsH6, HOS16
CGSNL Gene Name HOMEOBOX 6
Gene Name Synonym Oryza sativa homeobox6, Rice KNOX gene-6, Homeobox protein knotted-1-like 1, Homeobox protein OSH6, Homeobox protein HOS16, Oryza sativa Homeobox 6
Protein Name HOMEOBOX PROTEIN OSH6
Allele osh6, osh6-1, osh6-2, osh6-3, osh6-4, osh6-5, osh6-6
Chromosome No. 1
Explanation Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. Q9FP29. ortholog of maize Lg3 (Liguleless3). TO:0001066: number of metaxylem vessels. TO:0000739: shoot axis morphology trait. TO:0000985: root system morphology trait.
Trait Class Vegetative organ - Shoot apical meristem(SAM)
Vegetative organ - Culm
Vegetative organ - Root
Expression
Sequence/Locus
cDNA Accession No. AK241312
MSU ID LOC_Os01g19694.1
RAP ID Os01g0302500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Reeger J.E., Wheatley M., Yang Y., Brown K.M.
Plant Direct 2021  5(6)  e00328
Targeted mutation of transcription factor genes alters metaxylem vessel size and number in rice roots.
Liu X., Wen-Jing Cai, Yin X., Yang D., Dong T., Yu-Qi Feng, Wu Y.
J. Exp. Bot. 2019   
Two dioxygenases, slc1 and SLC2, play essential roles in shoot development of rice.
Park S.H., Yun D.W., Lee G.S., Yoon, Ung-Han, Ji H.S., Ahn B.O., Park S.C., Kim Y.H., Kim Y.K., Kim C.K.
African Journal of Biotechnology 2011  10  1802-1811
Molecular and genetic characterization of osh6 (Oryza sativa homeobox 6) using dissociation (Ds) insertion mutant rice
Tsuda K., Ito Y., Sato Y., Kurata N.
Plant Cell 2011  23(12)  4368-81
Positive autoregulation of a KNOX gene is essential for shoot apical meristem maintenance in rice.
Tsuda K., Ito Y., Yamaki S., Miyao A., Hirochika H., Kurata N.
Plant Science 2009  177  131-135
Isolation and mapping of three rice mutants that showed ectopic expression of KNOX genes in leaves
Jain M,Tyagi AK,Khurana JP
FEBS J. 2008  275  2845-61
Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice.
Ito, Y., Eiguchi, M. and Kurata, N.
Genesis 2001  30  231-238
Sentoku, N., Sato, Y. and Matsuoka, M.
Dev. Biol. 2000  220  358-364
Sentoku,N., Sato,Y., Kurata,N., Ito,Y., Kitano,H. and Matsuoka,M.
Plant Cell 1999  11(9)  1651-1663
Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development.
TextPresso Search Search textpresso for OSH6 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0061311
Ontologies
Gene Ontology metaxylem development( GO:0090058 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
DNA binding( GO:0003677 )
Trait Ontology leaf shape( TO:0000492 )
vascular tissue related trait( TO:0000470 )
deep root number( TO:0001009 )
shoot dry weight( TO:0000552 )
crown root number( TO:0002685 )
Plant Ontology vascular leaf( PO:0009025 )
Related Strains
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Phenotype images
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Last updated
Sep 22, 2021


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