Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol OSH15
Gene Symbol Synonym OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
Gene Name Synonym Oryza sativa homeobox15, Rice KNOX gene-15, Homeobox protein knotted-1-like 12, Homeobox protein OSH15, Homeobox protein HOS3, Homeobox protein knotted-1-like 3, KNOX PROTEIN 3, Oryza sativa Homeobox 15
Allele d6-1, d6-ID6, d6-tankanshirasasa, osh15
Chromosome No. 7
Explanation Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH15 regulates the length (growth) of 1st internode. KNOX class homeodomain protein. loss-of-function of the OSH15 gene causes the d6-type dwarf phenotype in rice (Sato et al. 1999). Class 1 KNOX gene. Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH15 regulates the length (growth) of 1st internode. KNOX class homeodomain protein. AF323786. AF003601. O65034(indica). O80416(japonica). PO:0030123: panicle inflorescence. TO:0000755: shoot internode anatomy and morphology trait. TO:0000975: grain width.
Trait Class Vegetative organ - Shoot apical meristem(SAM)
Vegetative organ - Leaf
Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
cDNA Accession No. AK111877
MSU ID LOC_Os07g03770.1
RAP ID Os07g0129700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Naithani S., Mohanty B., Elser J., D'Eustachio P., Jaiswal P.
Plants (Basel) 2023  12(11) 
Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).
Luo X., Wei Y., Zheng Y., Wei L., Wu F., Cai Q., Xie H., Zhang J.
BMC Plant Biol. 2023  23(1)  11
Analysis of co-expression and gene regulatory networks associated with sterile lemma development in rice.
Niu M., Wang H., Yin W., Meng W., Xiao Y., Liu D., Zhang X., Dong N., Liu J., Yang Y., Zhang F., Chu C., Tong H.
Plant Cell 2022  34(10)  3754-3772
Rice DWARF AND LOW-TILLERING and the homeodomain protein OSH15 interact to regulate internode elongation via orchestrating brassinosteroid signaling and metabolism.
Huang L., Hua K., Xu R., Zeng D., Wang R., Dong G., Zhang G., Lu X., Fang N., Wang D., Duan P., Zhang B., Liu Z., Li N., Luo Y., Qian Q., Yao S., Li Y.
Plant Cell 2021   
The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice.
Chen H., Fang R., Deng R., Li J.
Plant Biotechnol. J. 2021   
The OsmiRNA166b-OsHox32 pair regulates mechanical strength of rice plants by modulating cell wall biosynthesis.
Sun X., Ma Y., Yang C., Li J.
Plant Mol. Biol. 2020  104(3)  249-261
Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis.
Xiao Y., Zhang G., Liu D., Niu M., Tong H., Chu C.
Plant J. 2020   
GSK2 stabilizes OFP3 to suppress brassinosteroid responses in rice.
Cui X., Zhang Z., Wang Y., Wu J., Han X., Gu X., Lu T.
New Phytol. 2019  221(1)  326-340
TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell fate.
Liu X., Wen-Jing Cai, Yin X., Yang D., Dong T., Yu-Qi Feng, Wu Y.
J. Exp. Bot. 2019   
Two dioxygenases, slc1 and SLC2, play essential roles in shoot development of rice.
Bakshi A., Moin M., Datla R., Kirti P.B.
Plant Signal Behav 2017    0
Expression Profiling of Development Related Genes in Rice Plants Ectopically Expressing AtTOR.
Wang J., Wang R., Wang Y., Zhang L., Zhang L., Xu Y., Yao S.
Plant J. 2017   
SHORT and Solid Culm/RFL/APO2 for culm development in rice.
Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.
Plant J. 2015  83(5)  806-17
OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
Kuijt S.J., Greco R., Agalou A., Shao J., 't Hoen CC., Overnäs E., Osnato M., Curiale S., Meynard D., van Gulik R., Maraschin Sde F., Atallah M., de Kam RJ., Lamers G.E., Guiderdoni E., Rossini L., Meijer A.H., Ouwerkerk P.B.
Plant Physiol. 2014  164(4)  1952-66
Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX Families of Transcription Factors[W].
Yin H., Gao P., Liu C., Yang J., Liu Z., Luo D.
Planta 2013  237(1)  15-27
SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
Park S.H., Yun D.W., Lee G.S., Yoon, Ung-Han, Ji H.S., Ahn B.O., Park S.C., Kim Y.H., Kim Y.K., Kim C.K.
African Journal of Biotechnology 2011  10  1802-1811
Molecular and genetic characterization of osh6 (Oryza sativa homeobox 6) using dissociation (Ds) insertion mutant rice
Tsuda K., Ito Y., Sato Y., Kurata N.
Plant Cell 2011  23(12)  4368-81
Positive autoregulation of a KNOX gene is essential for shoot apical meristem maintenance in rice.
Tsuda K., Ito Y., Yamaki S., Miyao A., Hirochika H., Kurata N.
Plant Science 2009  177  131-135
Isolation and mapping of three rice mutants that showed ectopic expression of KNOX genes in leaves
Jain M,Tyagi AK,Khurana JP
FEBS J. 2008  275  2845-61
Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice.
Nagasaki,H., Matsuoka,M. and Sato,Y.
Genes Genet. Syst. 2005  80(4)  261-267
Members of TALE and WUS subfamilies of homeodomain proteins with potentially important functions in development form dimers within each subfamily in rice.
Kuijt SJ, Lamers GE, Rueb S, Scarpella E, Ouwerkerk PB, Spaink HP, Meijer AH.
Plant Mol. Biol. 2004  55(6)  781-796
Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
Postma-Haarsma AD, Rueb S, Scarpella E, den Besten W, Hoge JH, Meijer AH.
Plant Mol. Biol. 2002  48(4)  423-441
Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
Ito, Y., Eiguchi, M. and Kurata, N.
Genesis 2001  30  231-238
Nagasaki, H., T. Sakamoto, Y. Sato, and M. Matsuoka
Plant Cell 2001  13  2085-2098
Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
Sentoku, N., Sato, Y. and Matsuoka, M.
Dev. Biol. 2000  220  358-364
Sato, Y., N. Sentoku, Y. Miura, H. Hirochika, H. Kitano and M. Matsuoka
EMBO J. 1999  18(4)  992-1002
Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
Postma-Haarsma,A.D., Verwoert,I.I., Stronk,O.P., Koster,J., Lamers,G.E., Hoge,J.H. and Meijer,A.H.
Plant Mol. Biol. 1999  39(2)  257-271
Characterization of the KNOX class homeobox genes Oskn2 and Oskn3 identified in a collection of cDNA libraries covering the early stages of rice embryogenesis.
Liu,G., Yan,C., Zhai,W., He,P., Yang,J., Li,X. and Zhu,L.
Sci. China, C, Life Sciences 1999  42(2)  162-170
Amplification, analysis and chromosome mapping of novel homeobox-containing and homeobox-flanking sequences in rice
Sentoku,N., Sato,Y., Kurata,N., Ito,Y., Kitano,H. and Matsuoka,M.
Plant Cell 1999  11(9)  1651-1663
Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development.
Sato,Y., Sentoku,N., Nagato,Y. and Matsuoka,M.
Plant Mol. Biol. 1998  38(6)  983-998
Isolation and characterization of a rice homebox gene, OSH15.
TextPresso Search Search textpresso for OSH15 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0061109,GR:0061181
Gene Ontology response to gravity( GO:0009629 )
seed germination( GO:0009845 )
response to flooding( GO:0009413 )
cell proliferation( GO:0008283 )
regulation of brassinosteroid biosynthetic process( GO:0010422 )
brassinosteroid homeostasis( GO:0010268 )
response to brassinosteroid stimulus( GO:0009741 )
inflorescence development( GO:0010229 )
brassinosteroid metabolic process( GO:0016131 )
brassinosteroid mediated signaling( GO:0009742 )
DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
regulation of shoot development( GO:0048831 )
internode patterning( GO:0080006 )
Trait Ontology leaf shape( TO:0000492 )
internode length( TO:0000145 )
inflorescence development trait( TO:0000621 )
brassinosteroid sensitivity( TO:0002677 )
brassinosteroid content( TO:0002676 )
tiller number( TO:0000346 )
seedling height( TO:0000019 )
stem length( TO:0000576 )
grain size( TO:0000397 )
grain length( TO:0000734 )
submergence tolerance( TO:0000524 )
gravity response trait( TO:0002693 )
Plant Ontology vascular leaf( PO:0009025 )
stem elongation stage( PO:0007089 )
shoot internode( PO:0005005 )
stem internode( PO:0020142 )
inflorescence development stage( PO:0001083 )
parenchyma( PO:0005421 )
0 seed germination stage( PO:0007057 )
coleoptile emergence stage( PO:0007045 )
Related Strains
Phenotype images
Last updated
Sep 8, 2023