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Basic Information
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CGSNL Gene Symbol
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OSH15
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Gene Symbol Synonym
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OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
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CGSNL Gene Name
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HOMEOBOX 15
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Gene Name Synonym
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Oryza sativa homeobox15, Rice KNOX gene-15, Homeobox protein knotted-1-like 12, Homeobox protein OSH15, Homeobox protein HOS3, Homeobox protein knotted-1-like 3, KNOX PROTEIN 3, Oryza sativa Homeobox 15
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Protein Name
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HOMEOBOX PROTEIN OSH15
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Allele
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d6-1, d6-ID6, d6-tankanshirasasa, osh15
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Chromosome No.
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7
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Explanation
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Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH15 regulates the length (growth) of 1st internode. KNOX class homeodomain protein. loss-of-function of the OSH15 gene causes the d6-type dwarf phenotype in rice (Sato et al. 1999). Class 1 KNOX gene. Knotted-type homeobox gene which shows specific expression in the embryo, shoot and flower organ primordium. OSH15 regulates the length (growth) of 1st internode. KNOX class homeodomain protein. AF323786. AF003601. O65034(indica). O80416(japonica). PO:0030123: panicle inflorescence. TO:0000755: shoot internode anatomy and morphology trait. TO:0000975: grain width. GO:1901698: response to nitrogen compound.
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Trait Class
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Vegetative organ - Shoot apical meristem(SAM)
Vegetative organ - Leaf
Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Character as QTL - Germination
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK111877
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MSU ID
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LOC_Os07g03770.1
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RAP ID
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Os07g0129700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
)
RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Zhang J., Zhang Y., Chen J., Xu M., Guan X., Wu C., Zhang S., Qu H., Chu J., Xu Y., Gu M., Liu Y., Xu G.
Nat Commun 2024 15(1) 9233
Sugar transporter modulates nitrogen-determined tillering and yield formation in rice.
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Naithani S., Mohanty B., Elser J., D'Eustachio P., Jaiswal P.
Plants (Basel) 2023 12(11)
Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (<i>Oryza sativa</i>).
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Luo X., Wei Y., Zheng Y., Wei L., Wu F., Cai Q., Xie H., Zhang J.
BMC Plant Biol. 2023 23(1) 11
Analysis of co-expression and gene regulatory networks associated with sterile lemma development in rice.
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Niu M., Wang H., Yin W., Meng W., Xiao Y., Liu D., Zhang X., Dong N., Liu J., Yang Y., Zhang F., Chu C., Tong H.
Plant Cell 2022 34(10) 3754-3772
Rice DWARF AND LOW-TILLERING and the homeodomain protein OSH15 interact to regulate internode elongation via orchestrating brassinosteroid signaling and metabolism.
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Chen H., Fang R., Deng R., Li J.
Plant Biotechnol. J. 2021
The OsmiRNA166b-OsHox32 pair regulates mechanical strength of rice plants by modulating cell wall biosynthesis.
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Huang L., Hua K., Xu R., Zeng D., Wang R., Dong G., Zhang G., Lu X., Fang N., Wang D., Duan P., Zhang B., Liu Z., Li N., Luo Y., Qian Q., Yao S., Li Y.
Plant Cell 2021
The LARGE2-APO1/APO2 regulatory module controls panicle size and grain number in rice.
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Sun X., Ma Y., Yang C., Li J.
Plant Mol. Biol. 2020 104(3) 249-261
Rice OVATE family protein 6 regulates leaf angle by modulating secondary cell wall biosynthesis.
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Xiao Y., Zhang G., Liu D., Niu M., Tong H., Chu C.
Plant J. 2020
GSK2 stabilizes OFP3 to suppress brassinosteroid responses in rice.
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Liu X., Wen-Jing Cai, Yin X., Yang D., Dong T., Yu-Qi Feng, Wu Y.
J. Exp. Bot. 2019
Two dioxygenases, slc1 and SLC2, play essential roles in shoot development of rice.
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Cui X., Zhang Z., Wang Y., Wu J., Han X., Gu X., Lu T.
New Phytol. 2019 221(1) 326-340
TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell fate.
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Bakshi A., Moin M., Datla R., Kirti P.B.
Plant Signal Behav 2017 0
Expression Profiling of Development Related Genes in Rice Plants Ectopically Expressing AtTOR.
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Wang J., Wang R., Wang Y., Zhang L., Zhang L., Xu Y., Yao S.
Plant J. 2017
SHORT and Solid Culm/RFL/APO2 for culm development in rice.
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Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.
Plant J. 2015 83(5) 806-17
OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
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Kuijt S.J., Greco R., Agalou A., Shao J., 't Hoen CC., Overnäs E., Osnato M., Curiale S., Meynard D., van Gulik R., Maraschin Sde F., Atallah M., de Kam RJ., Lamers G.E., Guiderdoni E., Rossini L., Meijer A.H., Ouwerkerk P.B.
Plant Physiol. 2014 164(4) 1952-66
Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX Families of Transcription Factors[W].
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Yin H., Gao P., Liu C., Yang J., Liu Z., Luo D.
Planta 2013 237(1) 15-27
SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
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Tsuda K., Ito Y., Sato Y., Kurata N.
Plant Cell 2011 23(12) 4368-81
Positive autoregulation of a KNOX gene is essential for shoot apical meristem maintenance in rice.
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Park S.H., Yun D.W., Lee G.S., Yoon, Ung-Han, Ji H.S., Ahn B.O., Park S.C., Kim Y.H., Kim Y.K., Kim C.K.
African Journal of Biotechnology 2011 10 1802-1811
Molecular and genetic characterization of osh6 (Oryza sativa homeobox 6) using dissociation (Ds) insertion mutant rice
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Tsuda K., Ito Y., Yamaki S., Miyao A., Hirochika H., Kurata N.
Plant Science 2009 177 131-135
Isolation and mapping of three rice mutants that showed ectopic expression of KNOX genes in leaves
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Jain M,Tyagi AK,Khurana JP
FEBS J. 2008 275 2845-61
Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice.
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Nagasaki,H., Matsuoka,M. and Sato,Y.
Genes Genet. Syst. 2005 80(4) 261-267
Members of TALE and WUS subfamilies of homeodomain proteins with potentially important functions in development form dimers within each subfamily in rice.
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Kuijt SJ, Lamers GE, Rueb S, Scarpella E, Ouwerkerk PB, Spaink HP, Meijer AH.
Plant Mol. Biol. 2004 55(6) 781-796
Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
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Postma-Haarsma AD, Rueb S, Scarpella E, den Besten W, Hoge JH, Meijer AH.
Plant Mol. Biol. 2002 48(4) 423-441
Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
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Ito, Y., Eiguchi, M. and Kurata, N.
Genesis 2001 30 231-238
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Nagasaki, H., T. Sakamoto, Y. Sato, and M. Matsuoka
Plant Cell 2001 13 2085-2098
Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
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Sentoku, N., Sato, Y. and Matsuoka, M.
Dev. Biol. 2000 220 358-364
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Sentoku,N., Sato,Y., Kurata,N., Ito,Y., Kitano,H. and Matsuoka,M.
Plant Cell 1999 11(9) 1651-1663
Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development.
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Liu,G., Yan,C., Zhai,W., He,P., Yang,J., Li,X. and Zhu,L.
Sci. China, C, Life Sciences 1999 42(2) 162-170
Amplification, analysis and chromosome mapping of novel homeobox-containing and homeobox-flanking sequences in rice
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Sato, Y., N. Sentoku, Y. Miura, H. Hirochika, H. Kitano and M. Matsuoka
EMBO J. 1999 18(4) 992-1002
Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
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Postma-Haarsma,A.D., Verwoert,I.I., Stronk,O.P., Koster,J., Lamers,G.E., Hoge,J.H. and Meijer,A.H.
Plant Mol. Biol. 1999 39(2) 257-271
Characterization of the KNOX class homeobox genes Oskn2 and Oskn3 identified in a collection of cDNA libraries covering the early stages of rice embryogenesis.
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Sato,Y., Sentoku,N., Nagato,Y. and Matsuoka,M.
Plant Mol. Biol. 1998 38(6) 983-998
Isolation and characterization of a rice homebox gene, OSH15.
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TextPresso Search
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Search textpresso for OSH15
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0061109,GR:0061181
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Ontologies
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Gene Ontology
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response to gravity( GO:0009629 )
seed germination( GO:0009845 )
response to flooding( GO:0009413 )
cell proliferation( GO:0008283 )
regulation of brassinosteroid biosynthetic process( GO:0010422 )
brassinosteroid homeostasis( GO:0010268 )
response to brassinosteroid stimulus( GO:0009741 )
inflorescence development( GO:0010229 )
brassinosteroid metabolic process( GO:0016131 )
brassinosteroid mediated signaling( GO:0009742 )
DNA binding( GO:0003677 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
regulation of shoot development( GO:0048831 )
internode patterning( GO:0080006 )
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Trait Ontology
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leaf shape( TO:0000492 )
internode length( TO:0000145 )
inflorescence development trait( TO:0000621 )
brassinosteroid sensitivity( TO:0002677 )
brassinosteroid content( TO:0002676 )
tiller number( TO:0000346 )
seedling height( TO:0000019 )
stem length( TO:0000576 )
grain size( TO:0000397 )
grain length( TO:0000734 )
submergence tolerance( TO:0000524 )
gravity response trait( TO:0002693 )
nitrogen sensitivity( TO:0000011 )
tillering ability( TO:0000329 )
grain yield( TO:0000396 )
gibberellic acid content( TO:0002675 )
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Plant Ontology
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vascular leaf( PO:0009025 )
stem elongation stage( PO:0007089 )
shoot internode( PO:0005005 )
stem internode( PO:0020142 )
inflorescence development stage( PO:0001083 )
parenchyma( PO:0005421 )
0 seed germination stage( PO:0007057 )
coleoptile emergence stage( PO:0007045 )
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Related Strains
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Phenotype images
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Last updated
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Dec 17, 2024
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