Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol EXPA1
Gene Symbol Synonym OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA
Gene Name Synonym Rice expansin-1, Expansin-A1, Alpha-expansin-1, Expansin S2
Chromosome No. 4
Explanation This gene controls the expansin which is a protein catalyzing long-term extension of isolated cell walls. Q7XWU8, Y07782(cDNA), AF394543(Genomic). D42004, D40668. GO:1902347: response to strigolactone. GO:0080167: response to karrikin.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK069548
MSU ID LOC_Os04g15840.1
RAP ID Os04g0228400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Dong S., Dong X., Han X., Zhang F., Zhu Y., Xin X., Wang Y., Hu Y., Yuan D., Wang J., Huang Z., Niu F., Hu Z., Yan P., Cao L., He H., Fu J., Xin Y., Tan Y., Mao B., Zhao B., Yang J., Yuan L., Luo X.
Proc. Natl. Acad. Sci. U.S.A. 2021  118(29) 
<i>OsPDCD5</i> negatively regulates plant architecture and grain yield in rice.
Zheng J., Hong K., Zeng L., Wang L., Kang S., Qu M., Dai J., Zou L., Zhu L., Tang Z., Meng X., Wang B., Hu J., Zeng D., Zhao Y., Cui P., Wang Q., Qian Q., Wang Y., Li J., Xiong G.
Plant Cell 2020  32(9)  2780-2805
Karrikin Signaling Acts Parallel to and Additively with Strigolactone Signaling to Regulate Rice Mesocotyl Elongation in Darkness.
Liu H., Ren D., Jiang L., Li X., Yao Y., Mi L., Chen W., Mo A., Jiang N., Yang J., Chen P., Ma H., Luo X., Lu P.
Plant Cell 2020   
A Natural Variation in PLEIOTROPIC DEVELOPMENTAL DEFECTS Uncovers a Crucial Role for Chloroplast tRNA Modification in Translation and Plant Development.
Hu K., Cao J., Zhang J., Xia F., Ke Y., Zhang H., Xie W., Liu H., Cui Y., Cao Y., Sun X., Xiao J., Li X., Zhang Q., Wang S.
Nat Plants 2017  3  17009
Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.
Burman N., Bhatnagar A., Khurana J.P.
Plant Physiol. 2017   
OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.
Jang S., Li H.Y.
Front Plant Sci 2017  8  1253
Oryza sativa BRASSINOSTEROID UPREGULATED1 LIKE1 Induces the Expression of a Gene Encoding a Small Leucine-Rich-Repeat Protein to Positively Regulate Lamina Inclination and grain Rice.
Todaka D., Nakashima K., Maruyama K., Kidokoro S., Osakabe Y., Ito Y., Matsukura S., Fujita Y., Yoshiwara K., Ohme-Takagi M., Kojima M., Sakakibara H., Shinozaki K., Yamaguchi-Shinozaki K.
Proc. Natl. Acad. Sci. U.S.A. 2012  109(39)  15947-52
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
Takahashi H., Saika H., Matsumura H., Nagamura Y., Tsutsumi N., Nishizawa N.K., Nakazono M.
Ann. Bot. 2011  108(2)  253-61
Cell division and cell elongation in the coleoptile of rice alcohol dehydrogenase 1-deficient mutant are reduced under complete submergence.
Magneschi L,Kudahettige RL,Alpi A,Perata P
J. Plant Physiol. 2009  166  1576-80
Expansin gene expression and anoxic coleoptile elongation in rice cultivars.
Ren H., Song T., Wu T., Sun L., Liu Y., Yang F., Chen Z., Dong H.
Ann. Microbiol. 2006  56  281-287
Effects of a biocontrol bacterium on growth and defence of transgenic rice plants expressing a bacterial type-III effector
Ren H., Gu G., Long J., Yin Q., Wu T., Song T., Zhang S., Chen Z., Dong H.
J. Biosci. 2006  31(5)  617-27
Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance.
Jun-Hye Shin, Dong-Hoon Jeong, Min Chul Park, An G.
Mol. Cells 2005  20(2)  210-8
Characterization and transcriptional expression of the alpha-expansin gene family in rice.
Kende H., Bradford K., Brummell D., Hyung-Taeg Cho, Cosgrove D., Fleming A., Gehring C., Lee Y., Simon McQueen-Mason, Rose J., Laurentius A C J Voesenek
Plant Mol. Biol. 2004  55(3)  311-4
Nomenclature for members of the expansin superfamily of genes and proteins.
Lee,Y. and Kende,H.
Plant Physiol. 2002  130(3)  1396-1405
Expression of alpha-Expansin and Expansin-Like Genes in Deepwater Rice.
Lee,Y., Choi,D. and Kende,H.
Curr. Opin. Plant Biol. 2001  4(6)  527-532
Expansins: ever-expanding numbers and functions.
Cho, H.T. and H. Kende
Plant J. 1998  15(6)  805-812
Tissue localization of expansins in deepwater rice.
Cho,H.T. and Kende,H.
Plant Cell 1997  9(9)  1661-1671
Expression of expansin genes is correlated with growth in deepwater rice.
Cho, H.T. and H. Kende
Plant Physiol. 1997  113  1137-1143
Expansins in deepwater rice internodes
Shcherban,T.Y., Shi,J., Durachko,D.M., Guiltinan,M.J., McQueen-Mason,S.J., Shieh,M. and Cosgrove,D.J.
Proc. Natl. Acad. Sci. U.S.A. 1995  92(20)  9245-9249
Molecular cloning and sequence analysis of expansins--a highly conserved, multigene family of proteins that mediate cell wall extension in plants.
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DB Reference
Gramene ID -
Gene Ontology plant-type cell wall organization( GO:0009664 )
extrinsic to membrane( GO:0019898 )
cytoplasmic membrane-bounded vesicle( GO:0016023 )
growth factor activity( GO:0008083 )
extracellular region( GO:0005576 )
cell wall( GO:0005618 )
cell wall organization( GO:0007047 )
Trait Ontology -
Plant Ontology -
Related Strains
Phenotype images
Last updated
Mar 2, 2022