Update info.Gene - Detail
Detail of Gene
Click here for feedback| Basic Information | |
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| CGSNL Gene Symbol | PLDalpha1 |
| Gene Symbol Synonym | RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2 |
| CGSNL Gene Name | PHOSPHOLIPASE D ALPHA 1 |
| Gene Name Synonym | Rice phospholipase D-1, Phospholipase D alpha 1, PLD alpha 1, Choline phosphatase 1, Phosphatidylcholine-hydrolyzing phospholipase D 1, phospholipase Dalpha1, C2 Domain-Containing Protein 2 |
| Protein Name | PHOSPHOLIPASE D ALPHA 1 |
| Allele | pldalpha1-1, pldalpha1, ospldalpha1, ospldalpha1-1, ospldalpha1-2, OsPLDalpha1-1a |
| Chromosome No. | 1 |
| Explanation | This gene controls phospholipase D in rice, being located on chromosome 1 at 24.0cM flanked by two markers RG472 and RG246. AB571657. AB001920, D73411. AU091558, AU032202, BE039748, AU032715, D47979, AU032201, AU062713, AW155115, AW155255, AU182480, AU184488, BI118697, AU197861, AU197860, BI799720, BI813684, BI807829, AU184489. EC=3.1.4.4 Q43007.MF966931 (Oryza officinalis OsPLDalpha1-1a). TO:0001069: cooking quality trait. the GenBank repository with accession numbers: O. glaberrima [IRGC100854 (MF774061), IRGC101800 (MF919319), IRGC102196 (MF919320), IRGC102489 (MF919321), IRGC102512 (MF919322), IRGC102600b (MF919323), IRGC102925 (MF919324), IRGC103750 (MF919325)]; O. bartii [IRGC100117 (MF919326), IRGC101317 (MF919327), IRGC104102 (MF919328), IRGC105990 (MF919329), IRGC106239 (MF919330), IRGC106294 (MF919331)]; O. nivara [CR100008 (MF919334), CR100400 (MF919335), CR100429 (MF91336), IRGC80547 (MF919332), IRGC81847 (MG725633), IRGC92713 (MF919337), IRGC92930 (MG725634), IRGC100189 (MF919338), IRGC106397 (MF919333)]; O. rufipogon [CR100013 (MG725637), IRGC80610 (MG725635), IRGC81976 (MG725638), IRGC83823 (MG725640), IRGC89224 (MG725641), IRGC99551 (MG725642), IRGC103308 (MF919339), IRGC104308 (MG725643) IRGC104867 (MF966922), IRGC105491 (MG7256360), IRGC105569 (MF966923), IRGC105902 (MF966924), IRGC106162 (MF966925), IRGC106336 (MF966926), IRGC106433 (MF966927), IRGC113652 (MF966928)]; O. longistaminata [IRGC101200 (MG725645), IRGC104301 (MG725646), IRGC105206 (MG725647)]; O. meridionalis [IRGC101146 (MG725648)]; O. glumaepatula [IRGC100184 (MF966930), IRGC104387 (MF966929)]; O. officinalis [IRGC101152 (MF966931), IRGC105674 (MF966932), IRGC106501 (MF966933)]; O. australiensis [IRGC105275 (MG725650)]; O. punctata [IRGC105158 (MG725651)]; O. minuta [IRGC101100 (MG725652), IRGC101128 (MG725653)]; O. latifolia [IRGC105139 (MG725654)]; Feng-Ai-Zhan (MF975521); Kitake (MF975522); Minghui63 (MF975523); Nagina22 (MF975524); PR114 (MF975525); Pusa44 (MF975526). |
| Trait Class |
Biochemical character
Seed - Physiological traits - Storage substances Seed - Physiological traits - Taste Tolerance and resistance - Stress tolerance |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK065102
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| MSU ID |
LOC_Os01g07760.1
LOC_Os01g07760.2 |
| RAP ID |
Os01g0172400 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
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INSD Accession List (Test version) |
Link to INSD Accession List |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Zhang H., Zeng Y., Seo J., Kim Y.J., Kim S.T., Kwon S.W.
Int J Mol Sci 2022 23(4) Global Identification and Characterization of C2 Domain-Containing Proteins Associated with Abiotic Stress Response in Rice (<i>Oryza sativa</i> L.).
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Kaur A., Neelam K., Kaur K., Kitazumi A., de Los Reyes BG., Singh K.
Sci Rep 2020 10(1) 6571 Novel allelic variation in the Phospholipase D alpha1 gene (OsPLDalpha1) of wild Oryza species implies to its low expression in rice bran.
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Khan M.S.S., Basnet R., Ahmed S., Bao J., Shu Q.
Plants (Basel) 2020 9(3) Mutations of <i>OsPLDa1</i> Increase Lysophospholipid Content and Enhance Cooking and Eating Quality in Rice.
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Huo C., Zhang B., Wang H., Wang F., Liu M., Gao Y., Zhang W., Deng Z., Sun D., Tang W.
Mol. Cell Proteomics 2016 15(4) 1397-411 Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dalpha1 in Mediating Cold Acclimation Signaling Pathway in Rice.
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Suzuki,Y., Takeuchi,Y. and Shirasawa,K.
Crop Sci. 2011 Identification of a seed phospholipase D null allele in rice (Oryza sativa L.) and development of SNP markers for phospholipase D deficiency
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Shen P., Wang R., Jing W., Zhang W.
Journal of integrative plant biology 2011 53 289-299 Rice Phospholipase D留 is Involved in Salt Tolerance by the Mediation of H+-ATPase Activity and Transcription
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Qi J., Zhou G., Yang L., Erb M., Lu Y., Sun X., Cheng J., Lou Y.
Plant Physiol. 2011 157(4) 1987-99 The Chloroplast-Localized Phospholipases D alpha4 and alpha5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice.
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Li G, Lin F, Xue HW.
Cell Res 2007 17(10) 881-94. Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination.
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McGee,J.D., Roe,J.L., Sweat,T.A., Wang,X., Guikema,J.A. and Leach,J.E.
Plant Cell Physiol. 2003 44(10) 1013-1026 Rice phospholipase d isoforms show differential cellular location and gene induction.
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Elias,M., Potocky,M., Cvrckova,F. and V.
BMC Genomics. 2002 3(1) 2 Molecular diversity of phospholipase D in angiosperms.
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Morioka,S., Ueki,J. and Komari,T.
Plant Physiol. 1997 114(1) 396 Characterization of two distinctive genomic clones (Accession Nos. AB001919 and AB001920) for phospholipase D from rice (PGR97-076)
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Solinas,G., Pandolfo,D., Valle,G. and Coraggio,I.
Plant Physiol. 1997 114(1) 395-396 The electronic Plant Gene Register.
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Ueki,J., Morioka,S., Komari,T. and Kumashiro,T.
Plant Cell Physiol. 1995 36(5) 903-914 Purification and characterization of phospholipase D (PLD) from rice (Oryza sativa L.) and cloning of cDNA for PLD from rice and maize (Zea mays L.).
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| TextPresso Search | Search textpresso for PLDalpha1 ( Recent references may be retrievable, but without any warranty ) |
| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
membrane( GO:0016020 )
lipid catabolic process( GO:0016042 ) phosphatidylcholine metabolic process( GO:0046470 ) NAPE-specific phospholipase D activity( GO:0070290 ) phospholipase D activity( GO:0004630 ) calcium ion binding( GO:0005509 ) response to cold( GO:0009409 ) cold acclimation( GO:0009631 ) response to freezing( GO:0050826 ) phosphatidic acid biosynthetic process( GO:0006654 ) |
| Trait Ontology |
cold tolerance( TO:0000303 )
amylose content( TO:0000196 ) gelatinization temperature( TO:0000462 ) seed quality( TO:0000162 ) peak viscosity( TO:0000409 ) hot paste viscosity( TO:0000408 ) cool paste viscosity( TO:0000379 ) breakdown viscosity( TO:0000374 ) |
| Plant Ontology | - |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jun 20, 2022 | |
