Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol PLDalpha1
Gene Symbol Synonym RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2
Gene Name Synonym Rice phospholipase D-1, Phospholipase D alpha 1, PLD alpha 1, Choline phosphatase 1, Phosphatidylcholine-hydrolyzing phospholipase D 1, phospholipase Dalpha1, C2 Domain-Containing Protein 2
Allele pldalpha1-1, pldalpha1, ospldalpha1, ospldalpha1-1, ospldalpha1-2, OsPLDalpha1-1a
Chromosome No. 1
Explanation This gene controls phospholipase D in rice, being located on chromosome 1 at 24.0cM flanked by two markers RG472 and RG246. AB571657. AB001920, D73411. AU091558, AU032202, BE039748, AU032715, D47979, AU032201, AU062713, AW155115, AW155255, AU182480, AU184488, BI118697, AU197861, AU197860, BI799720, BI813684, BI807829, AU184489. EC= Q43007.MF966931 (Oryza officinalis OsPLDalpha1-1a). TO:0001069: cooking quality trait. the GenBank repository with accession numbers: O. glaberrima [IRGC100854 (MF774061), IRGC101800 (MF919319), IRGC102196 (MF919320), IRGC102489 (MF919321), IRGC102512 (MF919322), IRGC102600b (MF919323), IRGC102925 (MF919324), IRGC103750 (MF919325)]; O. bartii [IRGC100117 (MF919326), IRGC101317 (MF919327), IRGC104102 (MF919328), IRGC105990 (MF919329), IRGC106239 (MF919330), IRGC106294 (MF919331)]; O. nivara [CR100008 (MF919334), CR100400 (MF919335), CR100429 (MF91336), IRGC80547 (MF919332), IRGC81847 (MG725633), IRGC92713 (MF919337), IRGC92930 (MG725634), IRGC100189 (MF919338), IRGC106397 (MF919333)]; O. rufipogon [CR100013 (MG725637), IRGC80610 (MG725635), IRGC81976 (MG725638), IRGC83823 (MG725640), IRGC89224 (MG725641), IRGC99551 (MG725642), IRGC103308 (MF919339), IRGC104308 (MG725643) IRGC104867 (MF966922), IRGC105491 (MG7256360), IRGC105569 (MF966923), IRGC105902 (MF966924), IRGC106162 (MF966925), IRGC106336 (MF966926), IRGC106433 (MF966927), IRGC113652 (MF966928)]; O. longistaminata [IRGC101200 (MG725645), IRGC104301 (MG725646), IRGC105206 (MG725647)]; O. meridionalis [IRGC101146 (MG725648)]; O. glumaepatula [IRGC100184 (MF966930), IRGC104387 (MF966929)]; O. officinalis [IRGC101152 (MF966931), IRGC105674 (MF966932), IRGC106501 (MF966933)]; O. australiensis [IRGC105275 (MG725650)]; O. punctata [IRGC105158 (MG725651)]; O. minuta [IRGC101100 (MG725652), IRGC101128 (MG725653)]; O. latifolia [IRGC105139 (MG725654)]; Feng-Ai-Zhan (MF975521); Kitake (MF975522); Minghui63 (MF975523); Nagina22 (MF975524); PR114 (MF975525); Pusa44 (MF975526).
Trait Class Biochemical character
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Taste
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK065102
MSU ID LOC_Os01g07760.1
RAP ID Os01g0172400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Zhang H., Zeng Y., Seo J., Kim Y.J., Kim S.T., Kwon S.W.
Int J Mol Sci 2022  23(4) 
Global Identification and Characterization of C2 Domain-Containing Proteins Associated with Abiotic Stress Response in Rice (<i>Oryza sativa</i> L.).
Sun Y., Song K., Liu L., Sun L., Qin Q., Jiang T., Zhou B., Zhu C., Xu G., Sun S., Xue Y.
J. Exp. Bot. 2021   
Silencing of Sulfoquinovosyl Diacylglycerol Synthase 1 Impairs the Glycolipids Accumulation and Photosynthesis in Phosphate-deprived Rice.
Kaur A., Neelam K., Kaur K., Kitazumi A., de Los Reyes BG., Singh K.
Sci Rep 2020  10(1)  6571
Novel allelic variation in the Phospholipase D alpha1 gene (OsPLDalpha1) of wild Oryza species implies to its low expression in rice bran.
Khan M.S.S., Basnet R., Ahmed S., Bao J., Shu Q.
Plants (Basel) 2020  9(3) 
Mutations of <i>OsPLDa1</i> Increase Lysophospholipid Content and Enhance Cooking and Eating Quality in Rice.
Gong X., Zhang Z., Yue J., Tang W., Tang X., Zeng Z., Niu X., Chen D., Sang X., Xiao F., He G., Liu Y.
Crop Sci. 2018  58  486-506
Phenotypic Characterization, Fine Mapping, and Altered Expression Profiling of roses1 Mutation That Affects Organ Size and Water Loss Through Regulating Stomatal Density in Rice
Huo C., Zhang B., Wang H., Wang F., Liu M., Gao Y., Zhang W., Deng Z., Sun D., Tang W.
Mol. Cell Proteomics 2016  15(4)  1397-411
Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dalpha1 in Mediating Cold Acclimation Signaling Pathway in Rice.
Shen P., Wang R., Jing W., Zhang W.
Journal of integrative plant biology 2011  53  289-299
Rice Phospholipase D留 is Involved in Salt Tolerance by the Mediation of H+-ATPase Activity and Transcription
Suzuki,Y., Takeuchi,Y. and Shirasawa,K.
Crop Sci. 2011   
Identification of a seed phospholipase D null allele in rice (Oryza sativa L.) and development of SNP markers for phospholipase D deficiency
Qi J., Zhou G., Yang L., Erb M., Lu Y., Sun X., Cheng J., Lou Y.
Plant Physiol. 2011  157(4)  1987-99
The Chloroplast-Localized Phospholipases D alpha4 and alpha5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice.
Li G, Lin F, Xue HW.
Cell Res 2007  17(10)  881-94.
Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination.
McGee,J.D., Roe,J.L., Sweat,T.A., Wang,X., Guikema,J.A. and Leach,J.E.
Plant Cell Physiol. 2003  44(10)  1013-1026
Rice phospholipase d isoforms show differential cellular location and gene induction.
Elias,M., Potocky,M., Cvrckova,F. and V.
BMC Genomics. 2002  3(1)  2
Molecular diversity of phospholipase D in angiosperms.
Solinas,G., Pandolfo,D., Valle,G. and Coraggio,I.
Plant Physiol. 1997  114(1)  395-396
The electronic Plant Gene Register.
Morioka,S., Ueki,J. and Komari,T.
Plant Physiol. 1997  114(1)  396
Characterization of two distinctive genomic clones (Accession Nos. AB001919 and AB001920) for phospholipase D from rice (PGR97-076)
Ueki,J., Morioka,S., Komari,T. and Kumashiro,T.
Plant Cell Physiol. 1995  36(5)  903-914
Purification and characterization of phospholipase D (PLD) from rice (Oryza sativa L.) and cloning of cDNA for PLD from rice and maize (Zea mays L.).
TextPresso Search Search textpresso for PLDalpha1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology membrane( GO:0016020 )
lipid catabolic process( GO:0016042 )
phosphatidylcholine metabolic process( GO:0046470 )
NAPE-specific phospholipase D activity( GO:0070290 )
phospholipase D activity( GO:0004630 )
calcium ion binding( GO:0005509 )
response to cold( GO:0009409 )
cold acclimation( GO:0009631 )
response to freezing( GO:0050826 )
phosphatidic acid biosynthetic process( GO:0006654 )
Trait Ontology cold tolerance( TO:0000303 )
amylose content( TO:0000196 )
gelatinization temperature( TO:0000462 )
seed quality( TO:0000162 )
peak viscosity( TO:0000409 )
hot paste viscosity( TO:0000408 )
cool paste viscosity( TO:0000379 )
breakdown viscosity( TO:0000374 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Jul 19, 2023