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Basic Information
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CGSNL Gene Symbol
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PLDalpha1
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Gene Symbol Synonym
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RPLD1, PLD1, OsPLDalpha1, OsC2DP2, C2DP2
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CGSNL Gene Name
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PHOSPHOLIPASE D ALPHA 1
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Gene Name Synonym
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Rice phospholipase D-1, Phospholipase D alpha 1, PLD alpha 1, Choline phosphatase 1, Phosphatidylcholine-hydrolyzing phospholipase D 1, phospholipase Dalpha1, C2 Domain-Containing Protein 2
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Protein Name
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PHOSPHOLIPASE D ALPHA 1
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Allele
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pldalpha1-1, pldalpha1, ospldalpha1, ospldalpha1-1, ospldalpha1-2, OsPLDalpha1-1a
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Chromosome No.
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1
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Explanation
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This gene controls phospholipase D in rice, being located on chromosome 1 at 24.0cM flanked by two markers RG472 and RG246. AB571657. AB001920, D73411. AU091558, AU032202, BE039748, AU032715, D47979, AU032201, AU062713, AW155115, AW155255, AU182480, AU184488, BI118697, AU197861, AU197860, BI799720, BI813684, BI807829, AU184489. EC=3.1.4.4 Q43007.MF966931 (Oryza officinalis OsPLDalpha1-1a). TO:0001069: cooking quality trait. the GenBank repository with accession numbers: O. glaberrima [IRGC100854 (MF774061), IRGC101800 (MF919319), IRGC102196 (MF919320), IRGC102489 (MF919321), IRGC102512 (MF919322), IRGC102600b (MF919323), IRGC102925 (MF919324), IRGC103750 (MF919325)]; O. bartii [IRGC100117 (MF919326), IRGC101317 (MF919327), IRGC104102 (MF919328), IRGC105990 (MF919329), IRGC106239 (MF919330), IRGC106294 (MF919331)]; O. nivara [CR100008 (MF919334), CR100400 (MF919335), CR100429 (MF91336), IRGC80547 (MF919332), IRGC81847 (MG725633), IRGC92713 (MF919337), IRGC92930 (MG725634), IRGC100189 (MF919338), IRGC106397 (MF919333)]; O. rufipogon [CR100013 (MG725637), IRGC80610 (MG725635), IRGC81976 (MG725638), IRGC83823 (MG725640), IRGC89224 (MG725641), IRGC99551 (MG725642), IRGC103308 (MF919339), IRGC104308 (MG725643) IRGC104867 (MF966922), IRGC105491 (MG7256360), IRGC105569 (MF966923), IRGC105902 (MF966924), IRGC106162 (MF966925), IRGC106336 (MF966926), IRGC106433 (MF966927), IRGC113652 (MF966928)]; O. longistaminata [IRGC101200 (MG725645), IRGC104301 (MG725646), IRGC105206 (MG725647)]; O. meridionalis [IRGC101146 (MG725648)]; O. glumaepatula [IRGC100184 (MF966930), IRGC104387 (MF966929)]; O. officinalis [IRGC101152 (MF966931), IRGC105674 (MF966932), IRGC106501 (MF966933)]; O. australiensis [IRGC105275 (MG725650)]; O. punctata [IRGC105158 (MG725651)]; O. minuta [IRGC101100 (MG725652), IRGC101128 (MG725653)]; O. latifolia [IRGC105139 (MG725654)]; Feng-Ai-Zhan (MF975521); Kitake (MF975522); Minghui63 (MF975523); Nagina22 (MF975524); PR114 (MF975525); Pusa44 (MF975526).
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Trait Class
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Biochemical character
Seed - Physiological traits - Storage substances
Seed - Physiological traits - Taste
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK065102
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MSU ID
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LOC_Os01g07760.1
LOC_Os01g07760.2
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RAP ID
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Os01g0172400
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
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Build5
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RAP-DB
(
IRGSP 1.0
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Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wang Y., Liu H., Bai L., Liu R., Jiang H., Tan J., Chen J.
BMC Plant Biol. 2024 24(1) 321
Overexpression of OsNAR2.1 by OsNAR2.1 promoter increases drought resistance by increasing the expression of OsPLDα1 in rice.
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Zhang H., Zeng Y., Seo J., Kim Y.J., Kim S.T., Kwon S.W.
Int J Mol Sci 2022 23(4)
Global Identification and Characterization of C2 Domain-Containing Proteins Associated with Abiotic Stress Response in Rice (<i>Oryza sativa</i> L.).
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Sun Y., Song K., Liu L., Sun L., Qin Q., Jiang T., Zhou B., Zhu C., Xu G., Sun S., Xue Y.
J. Exp. Bot. 2021
Silencing of Sulfoquinovosyl Diacylglycerol Synthase 1 Impairs the Glycolipids Accumulation and Photosynthesis in Phosphate-deprived Rice.
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Kaur A., Neelam K., Kaur K., Kitazumi A., de Los Reyes BG., Singh K.
Sci Rep 2020 10(1) 6571
Novel allelic variation in the Phospholipase D alpha1 gene (OsPLDalpha1) of wild Oryza species implies to its low expression in rice bran.
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Khan M.S.S., Basnet R., Ahmed S., Bao J., Shu Q.
Plants (Basel) 2020 9(3)
Mutations of <i>OsPLDa1</i> Increase Lysophospholipid Content and Enhance Cooking and Eating Quality in Rice.
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Gong X., Zhang Z., Yue J., Tang W., Tang X., Zeng Z., Niu X., Chen D., Sang X., Xiao F., He G., Liu Y.
Crop Sci. 2018 58 486-506
Phenotypic Characterization, Fine Mapping, and Altered Expression Profiling of roses1 Mutation That Affects Organ Size and Water Loss Through Regulating Stomatal Density in Rice
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Huo C., Zhang B., Wang H., Wang F., Liu M., Gao Y., Zhang W., Deng Z., Sun D., Tang W.
Mol. Cell Proteomics 2016 15(4) 1397-411
Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dalpha1 in Mediating Cold Acclimation Signaling Pathway in Rice.
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Qi J., Zhou G., Yang L., Erb M., Lu Y., Sun X., Cheng J., Lou Y.
Plant Physiol. 2011 157(4) 1987-99
The Chloroplast-Localized Phospholipases D alpha4 and alpha5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice.
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Suzuki,Y., Takeuchi,Y. and Shirasawa,K.
Crop Sci. 2011
Identification of a seed phospholipase D null allele in rice (Oryza sativa L.) and development of SNP markers for phospholipase D deficiency
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Shen P., Wang R., Jing W., Zhang W.
Journal of integrative plant biology 2011 53 289-299
Rice Phospholipase D留 is Involved in Salt Tolerance by the Mediation of H+-ATPase Activity and Transcription
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Li G, Lin F, Xue HW.
Cell Res 2007 17(10) 881-94.
Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination.
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McGee,J.D., Roe,J.L., Sweat,T.A., Wang,X., Guikema,J.A. and Leach,J.E.
Plant Cell Physiol. 2003 44(10) 1013-1026
Rice phospholipase d isoforms show differential cellular location and gene induction.
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Elias,M., Potocky,M., Cvrckova,F. and V.
BMC Genomics. 2002 3(1) 2
Molecular diversity of phospholipase D in angiosperms.
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Solinas,G., Pandolfo,D., Valle,G. and Coraggio,I.
Plant Physiol. 1997 114(1) 395-396
The electronic Plant Gene Register.
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Morioka,S., Ueki,J. and Komari,T.
Plant Physiol. 1997 114(1) 396
Characterization of two distinctive genomic clones (Accession Nos. AB001919 and AB001920) for phospholipase D from rice (PGR97-076)
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Ueki,J., Morioka,S., Komari,T. and Kumashiro,T.
Plant Cell Physiol. 1995 36(5) 903-914
Purification and characterization of phospholipase D (PLD) from rice (Oryza sativa L.) and cloning of cDNA for PLD from rice and maize (Zea mays L.).
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to osmotic stress( GO:0006970 )
response to water deprivation( GO:0009414 )
membrane( GO:0016020 )
lipid catabolic process( GO:0016042 )
phosphatidylcholine metabolic process( GO:0046470 )
NAPE-specific phospholipase D activity( GO:0070290 )
phospholipase D activity( GO:0004630 )
calcium ion binding( GO:0005509 )
response to cold( GO:0009409 )
cold acclimation( GO:0009631 )
response to freezing( GO:0050826 )
phosphatidic acid biosynthetic process( GO:0006654 )
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Trait Ontology
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cold tolerance( TO:0000303 )
amylose content( TO:0000196 )
gelatinization temperature( TO:0000462 )
seed quality( TO:0000162 )
peak viscosity( TO:0000409 )
hot paste viscosity( TO:0000408 )
cool paste viscosity( TO:0000379 )
breakdown viscosity( TO:0000374 )
drought tolerance( TO:0000276 )
osmotic response sensitivity( TO:0000095 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Sep 17, 2024
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Update info.